Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc251g00005 ATGGGGCTGGTGATGATTTGTATCAAGAGCTATGGAGGTTGTGTGCAGCTTCCAGAACCTACAGAACAAGAATTGAGGCAGATGATGGATCAGAAAACGCCGAAATATGATATTCCGTCGAAGATTTTGTTCCGAGTCATCGACGCGAAGTGTCTGGCCAAGATGGAATCGGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATAATGAGCCTCTAGATCCGAATCCGATTTGTTCCGAGAAACCGAAACAGAAGGTTTACTCATTTATTAAGACTCTAAGCACCTCGGATACTAGCACACATGGAGGATTTTCGGTTCAACGGAAGCATGCTAATGAATGCTTGCCTCAATTGGACATGACAACGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATACAGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGCTCATTTGTTGCGGCCAAGAAATTGGTTGCCGGAGATTCCTTTGTTATTCTAAGGGGAGAGAATGGGCAACTGAGAGTAGTCATTAGGCATCTGAATCCGCAGCAGAGTCCTACATCTTCATCCATGGTGTCGGCACAAAACATGCGACTTGGAGTGATTGTCACTGCAAGCCATTCTGTTATGACCAACACCATGTTTGTGGGAGAAGATCCACTTGTCAAAAGGTTTTGTGGTACTATCGTTGGAGTTGGAGATGAATCTCGAGAATGGCCGGATTTTCAATGGCGATCGTTGAAGGTTCAATGGGATGAACCAGCAACAATGCAAAGACCAGATAGAGTTTCATATTGGGAGATTGAACCTCTCATTATGCCTTTGAATTCGGTTCAACCAATCGCGAAGGGAAAAAGATCAAGGCATTCTGAGGCTTTATCTTCTGCAGATGGGGCTGGTGATGATTTGTATCAAGAGCTATGGAGGTTGTGTGCAGGTCCACTAATGGATGTTATTGTGTTTAAGACAGAGTTTTCTATTTCGCTTGTATTGCTAGATTTCAAGGTTCCATTTACACTGCCATGGTTGTTTCTTCCCTGA 1080 0.4417 MGLVMICIKSYGGCVQLPEPTEQELRQMMDQKTPKYDIPSKILFRVIDAKCLAKMESDEVYARITLQPSSDNEPLDPNPICSEKPKQKVYSFIKTLSTSDTSTHGGFSVQRKHANECLPQLDMTTENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSSFVAAKKLVAGDSFVILRGENGQLRVVIRHLNPQQSPTSSSMVSAQNMRLGVIVTASHSVMTNTMFVGEDPLVKRFCGTIVGVGDESREWPDFQWRSLKVQWDEPATMQRPDRVSYWEIEPLIMPLNSVQPIAKGKRSRHSEALSSADGAGDDLYQELWRLCAGPLMDVIVFKTEFSISLVLLDFKVPFTLPWLFLP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc251g00005 359 SMART B3_2 92 194 IPR003340 GO:0003677
Stsc251g00005 359 FunFam Auxin response factor 90 194 - -
Stsc251g00005 359 Gene3D - 219 287 - -
Stsc251g00005 359 SUPERFAMILY DNA-binding pseudobarrel domain 80 213 IPR015300 -
Stsc251g00005 359 Gene3D - 89 193 IPR015300 -
Stsc251g00005 359 FunFam Auxin response factor 220 287 - -
Stsc251g00005 359 CDD B3_DNA 91 191 IPR003340 GO:0003677
Stsc251g00005 359 ProSiteProfiles B3 DNA-binding domain profile. 92 194 IPR003340 GO:0003677
Stsc251g00005 359 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 227 303 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc251g00005 359 Pfam B3 DNA binding domain 92 191 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc251g00005 Stsc-Chr251 26740 30019 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc251g00005 31 301 B3 DNA Binding Superfamily AT3G61830 52.244 3.61e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc251g00005 B3 1.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc251g00005 K14486 - gmx:100790981 359.377