Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc251g00002 ATGGACTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTACCCCTTCGGAGAAAGAACTTAGGCGTGAAGCTTCCACTATCCTTGATAGTGGTCCCAAAGAATCTATTATTGTTTGTGCATGTGAGACTCAGAGGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCGTGAGAACTAGGACTAAGGTGAAAATGGAAGGTTTAGCAGTTGGTCGTGCAATTGACTTGAGCACATTAAAGGGTTATCATGAACTGATACTTGAGCTTGAGAAAATGTTTGATATTGAAGGAGAAATTACATCTAAGAAGAAATGGAACATAGAACAAATTTGTCACTGA 372 0.4059 MDCWLFGVNLTSSYSNVTPSEKELRREASTILDSGPKESIIVCACETQRVQSLNNHSLSNKQGHVPSVRTRTKVKMEGLAVGRAIDLSTLKGYHELILELEKMFDIEGEITSKKKWNIEQICH 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc251g00002 123 Gene3D - 65 120 - -
Stsc251g00002 123 ProSiteProfiles PB1 domain profile. 69 123 IPR000270 GO:0005515
Stsc251g00002 123 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 117 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc251g00002 123 Pfam AUX/IAA family 60 105 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc251g00002 Stsc-Chr251 13130 14100 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc251g00002 3 118 B3 DNA Binding Superfamily AT2G46530 44.444 1.73e-22 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc251g00002 AUX_IAA 1.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc251g00002 K14486 - gmx:100795763 136.732