Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc251490g00001 CCATTCGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACAAACCTTGACTGGTACAAGGGACCAACCCTTCTTGAGGCCCTTGACCAGATCAATGAGCCAAAAAGGCCATCAGACAAGCCCCTCCGTCTGCCACTTCAGGACGTGTACAAGATTGGTGGTATTGGAACTGTGCCAGTGGGACGTGTTGAAACTGGTGTCTTGAAGCCTGGTATGGTTGTGACCTTCGGACCTTCTGGACTGACAACTGAAGTTAAGTCAGTTGAGATGCACCATGAAGCTCTCCAAGAGGCCCTCCCAGGTGACAATGTTGGGTTCAACGTCAAGAATGTTGCAGTGAAGGATCTCAAGCGTGGTTATGTTGCCTCAAACTCCAAGGATGACCCTGCCAAGGAGGCCGCTAACTTCACCTCCCAGGTCATCATCATGAACCACCCTGGTCAGATCGGAAATGGCTATGCTCCAGTGCTTGATTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTTTGACCAAGATTGACAGGCGATCTGGTAAGGAGCTTGAGAAGGA 569 0.5062 PFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc251490g00001 189 CDD EF1_alpha_II 42 132 - -
Stsc251490g00001 189 Gene3D Translation factors 135 189 - -
Stsc251490g00001 189 FunFam Elongation factor 1-alpha 41 128 - -
Stsc251490g00001 189 Gene3D Translation factors 41 128 - -
Stsc251490g00001 189 Pfam Elongation factor Tu domain 2 60 125 IPR004161 GO:0005525
Stsc251490g00001 189 Pfam Elongation factor Tu C-terminal domain 133 186 IPR004160 -
Stsc251490g00001 189 PANTHER ELONGATION FACTOR 1 ALPHA 2 189 - -
Stsc251490g00001 189 SUPERFAMILY Translation proteins 43 172 IPR009000 -
Stsc251490g00001 189 Gene3D - 1 38 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc251490g00001 Stsc-Chr251490 1 569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc251490g00001 1 189 Eukaryotic Initiation Factors Gene Family AT5G60390 94.709 2.12e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc251490g00001 K03231 - rcu:125371098 383.259