LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc24g00023	ATGGGTGCTTACAAGTATGTTTCGGAGCTTTGGCGCAAGAAGCAGTCAGATGTGATGAGATTCTTGCAGAGGGTAAGGTGCTGGGAGTACCGTCAGCAGCCTTCCATTGTCCGGGTCACCAGGCCCACCCGACCCGACAAGGCTCGTCGCTTGGGTTACAAGGCCAAACAGGGCTATGTGATCTACCGTGTTCGTGTGCGAAGGGGTGGCCGTAAGAGACCTGTTCCCAAGGGTATTGTTTATGGCAAGCCCACAAACCAGGGTGTTACTCAGCTGAAATTTCAGCGAAGCAAGAGGTCTGTTGCTGAGGAGAGAGCTGGACGGAAGCTAGGTGGCCTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCGACATACAAATATTTCGAGATCATTATGGTGGATGTTGCCCACACAGCTGTTAGAAATGATCCAAGGATCAACTGGCTCTGCAATCCAGTCCACAAACACAGGGAACTTCGTGGCCTCACCTCTGCTGGGAAATCCAACAGGGGTTTACGGGGCAAGGGACATCTTTACCACAAAAATCGTCCTTCCCGCAGGGCAACCTGGAAGAGAAACAATACCCTTTCCCTCCGCCGTTACCGTTGA	615	0.522	MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVIYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIMVDVAHTAVRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGKGHLYHKNRPSRRATWKRNNTLSLRRYR	204

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc24g00023	204	SMART	Ribosomal_L15e_2	2	193	IPR000439	GO:0003735\|GO:0005840\|GO:0006412
	Stsc24g00023	204	ProSitePatterns	Ribosomal protein L15e signature.	46	69	IPR020925	GO:0003735\|GO:0005840\|GO:0006412
	Stsc24g00023	204	Pfam	Ribosomal L15	2	190	IPR000439	GO:0003735\|GO:0005840\|GO:0006412
	Stsc24g00023	204	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	1	195	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Stsc24g00023	204	PANTHER	RIBOSOMAL PROTEIN L15	1	204	IPR000439	GO:0003735\|GO:0005840\|GO:0006412
	Stsc24g00023	204	Gene3D	Ribosomal protein l15e	1	204	IPR024794	GO:0003735\|GO:0005840
	Stsc24g00023	204	FunFam	Ribosomal protein L15	1	204	-	-
	Stsc24g00023	204	MobiDBLite	consensus disorder prediction	164	187	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc24g00023	Stsc-Chr24	223893	225965	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc24g00023	1	204	Cytoplasmic Ribosomal Protein Gene Family	AT4G16720	91.667	4.12e-128	357

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc24g00023	K02877		-	gmx:100810310	403.29