Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc24g00019 ATGGCTCCAAAGAGTAATGAAAAGGCAACTAAGAAATCAGTGATGATGAATAGAGGAGCATGGACCCCTGAAGAGGATGATAAGCTAGCTCACTTCATTCAAATTCATGGTGCAAAGAGATGGAAGACTGTTGCAATCAAATCAGGTCTAAAAAGATGTGGGAAAAGTTGCAGGCTGAGATGGTTAAACTATCTTAGACCCAATATCAAGAGGGGAAACATCACAATTGAAGAAGAAGACTTGATTCTTAGGCTTCACAAACTTCTAGGAAACAGGTGGTCTCTGATAGCTGGGAGGCTTCCGGGACGAACAGACAATGAAATCAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGTCATGAATCAGAATGCAGAAGAGAAACCATCAACTTCATCAACAAAAGAAAGTGGTGTCACACTCAATAATAAACATGATAATGTAGAGGACGGTGAAGAAATAATGTTGGAAGAACAAAATAAAGGAGCCTCCAATAATAATGGGAGTGATGATAATTTAGATATTAGCTTCGATGTGGACGAATTTTTTGACTTCTCTACTACTGAGGAATCCTTTGGTTTTGATTGGATAAACAAGTACCTTGATTTTGATGAGAATCATGAGAGTACAAAAGAAAAAAAAATGACATGA 651 0.3717 MAPKSNEKATKKSVMMNRGAWTPEEDDKLAHFIQIHGAKRWKTVAIKSGLKRCGKSCRLRWLNYLRPNIKRGNITIEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVMNQNAEEKPSTSSTKESGVTLNNKHDNVEDGEEIMLEEQNKGASNNNGSDDNLDISFDVDEFFDFSTTEESFGFDWINKYLDFDENHESTKEKKMT 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc24g00019 216 MobiDBLite consensus disorder prediction 123 145 - -
Stsc24g00019 216 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 10 160 - -
Stsc24g00019 216 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Stsc24g00019 216 CDD SANT 20 65 IPR001005 -
Stsc24g00019 216 Gene3D - 74 147 - -
Stsc24g00019 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 65 IPR017930 -
Stsc24g00019 216 CDD SANT 77 116 IPR001005 -
Stsc24g00019 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Stsc24g00019 216 MobiDBLite consensus disorder prediction 123 141 - -
Stsc24g00019 216 SUPERFAMILY Homeodomain-like 17 112 IPR009057 -
Stsc24g00019 216 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Stsc24g00019 216 FunFam MYB-related transcription factor 17 70 - -
Stsc24g00019 216 Pfam Myb-like DNA-binding domain 71 116 IPR001005 -
Stsc24g00019 216 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Stsc24g00019 216 Gene3D - 10 71 - -
Stsc24g00019 216 SMART sant 70 118 IPR001005 -
Stsc24g00019 216 SMART sant 17 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc24g00019 Stsc-Chr24 187195 188873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc24g00019 16 203 MYB Transcription Factor Family AT3G13540 49.485 1.90e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc24g00019 Myb_DNA-binding 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc24g00019 K09422 - gmx:100799575 245.743