Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc24g00014 ATGGACAAGGAAGAAGAACATGTCCCTTTAGAGACCCAAACTCAACCAACTACCTCCTCCTCTATTACCATTATATCCTCCACGTCCTCATCTTCCTCCACCTTGGATGCCAAGAATAATAAGAAGAAGAAGGTTCTAAAGAGAAGCAATGATGGGAGGCACCACCCAACTTACAGAGGAGTGCGTATGCGCCAATGGGGAAAATGGGTATCCGAAATTCGAGAGCCTAGGAAGAAAACTAGGATTTGGCTTGGAACTTTTCCCACGGCTGAGATGGCGGCTCGAGCCCATGATGTGGCAGCTCTAACAATTAAGGGGAGCTCAACTTACCTTAATTTTCCCGAGCTAGTACCCAAATTGCCTCGTCCCGCTAGCAATTGCTCTAAAGATATACAAGCGGCTGCGGCCAAAGCCGCCGTCATGAATTATCAACAGAGCCATGAAATAGAATTGGAAGCCGAAGCTGAGTCCGAGCTGAGCCAAGTCGAGTCTTCATCAGGTGAAACTCAACAACCATCAAATTTTACTTCGTCGTCATTATTGAAGGGTGAGGATGACATGTTCTTGAATCTTCCTGATCTCTCATTAGACTTGAATCATAGTGCCGATGAGTTTCATTACCCATCGGCTTGGCTTTTAACCGGAGCCGGAGCCGAAACCGAACATATAGACTTAGGTTTCCGGCTTGAAGAACCGTTCATATGGGAGTCTTATTAA 717 0.4616 MDKEEEHVPLETQTQPTTSSSITIISSTSSSSSTLDAKNNKKKKVLKRSNDGRHHPTYRGVRMRQWGKWVSEIREPRKKTRIWLGTFPTAEMAARAHDVAALTIKGSSTYLNFPELVPKLPRPASNCSKDIQAAAAKAAVMNYQQSHEIELEAEAESELSQVESSSGETQQPSNFTSSSLLKGEDDMFLNLPDLSLDLNHSADEFHYPSAWLLTGAGAETEHIDLGFRLEEPFIWESY 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc24g00014 238 MobiDBLite consensus disorder prediction 155 177 - -
Stsc24g00014 238 CDD AP2 58 116 IPR001471 GO:0003700|GO:0006355
Stsc24g00014 238 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Stsc24g00014 238 MobiDBLite consensus disorder prediction 158 177 - -
Stsc24g00014 238 MobiDBLite consensus disorder prediction 11 36 - -
Stsc24g00014 238 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Stsc24g00014 238 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Stsc24g00014 238 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Stsc24g00014 238 FunFam Ethylene-responsive transcription factor 2 57 115 - -
Stsc24g00014 238 MobiDBLite consensus disorder prediction 1 60 - -
Stsc24g00014 238 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Stsc24g00014 238 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Stsc24g00014 238 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Stsc24g00014 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc24g00014 Stsc-Chr24 144560 145735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc24g00014 47 234 AP2-EREBP Transcription Factor Family AT2G44940 50.472 1.36e-57 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc24g00014 AP2 9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc24g00014 - - gmx:100101914 263.848