Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc24g00012 ATGACGCGGCGATGCTCGCATTGCAGCCACAATGGTCATAACTCGAGGACCTGCCCGAACCGCGGCGTCAAGCTCTTCGGGGTCCGATTAACTGATGGCTCGATCCGGAAGAGCGCTAGCATGGGGAATCTCACCCACTACGCCGGTTCAGGTTCCGGTTCGGGTCCTCTCCACGCTTCTGGTTCAAATAACCCCGGTTCGCCCGGTGATAACCACGATAACGCTGCTGCCGCTGACGGTTACGCTTCCGAGGACTTCGTTCCTGGCTCCTCTTCTAGCTCCCGTGAAAGAAAGAAGGGGGTTCCGTGGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTACAAAAGTTGGGCAAAGGTGATTGGCGCGGAATTGCAAGGAACTATGTTATATCAAGGACACCTACTCAAGTGGCCAGTCACGCACAAAAGTATTTCATTAGGCAAAGCAATGTGTCTAGACGGAAAAGACGCTCCAGCTTGTTTGACATTGTTGCTGATGAAGCAGCTGATGATACTCCAATGGTACAGCAAGATTTCTTGTCAGCTAACCAGGTAGAGGCTGAAACAGAAGGCAATAACCTCTTGCCTGCTGTTCCCACCCTCGACGAAGAGTGTGAATCCATGGATTCCACCAACTCCAATGACAGGGATTCTGTGTCTGTGCCCGAAAACTCGCAACCACCACAACAACAACCACCATCTTATCCAGTGCTATATCCTGCATACTATTCTCCATTCTTCCCATTTCCTCTGCCTTACTGGTCAGGGTACAGTCCAGAGCCTAATACTGTAAAGGAGGAGACACACGAGGTGCTGAAGCCAACTGCAGTGCATTCCAAAGCACCGATCAATGTCGACGAACTTGTTGGAATGTCGAAACTGAGCTTGGGAGAGACTATTGCAGACTCGGGACCCTCCTCTCTGTCCCTGAAGCTTCAAGAAGAAGGGCCATCTCGACAGTCGGCGTTTCACGCAACCCCGACATGTGGCAGTTCAAATATGAATGAGAGTGCCATCCATGCAGTTTAA 1035 0.5072 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLTHYAGSGSGSGPLHASGSNNPGSPGDNHDNAAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAADDTPMVQQDFLSANQVEAETEGNNLLPAVPTLDEECESMDSTNSNDRDSVSVPENSQPPQQQPPSYPVLYPAYYSPFFPFPLPYWSGYSPEPNTVKEETHEVLKPTAVHSKAPINVDELVGMSKLSLGETIADSGPSSLSLKLQEEGPSRQSAFHATPTCGSSNMNESAIHAV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc24g00012 344 MobiDBLite consensus disorder prediction 206 237 - -
Stsc24g00012 344 MobiDBLite consensus disorder prediction 46 70 - -
Stsc24g00012 344 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Stsc24g00012 344 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Stsc24g00012 344 CDD SANT 102 147 IPR001005 -
Stsc24g00012 344 SMART sant 99 149 IPR001005 -
Stsc24g00012 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 98 150 IPR006447 GO:0003677
Stsc24g00012 344 PANTHER TRANSCRIPTION FACTOR KUA1 3 282 - -
Stsc24g00012 344 MobiDBLite consensus disorder prediction 1 21 - -
Stsc24g00012 344 MobiDBLite consensus disorder prediction 322 344 - -
Stsc24g00012 344 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Stsc24g00012 344 Gene3D - 101 153 - -
Stsc24g00012 344 FunFam transcription factor MYB1R1 101 152 - -
Stsc24g00012 344 ProSiteProfiles SANT domain profile. 103 151 IPR017884 -
Stsc24g00012 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Stsc24g00012 344 MobiDBLite consensus disorder prediction 46 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc24g00012 Stsc-Chr24 86198 91331 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc24g00012 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc24g00012 - - ccaj:109807943 550.051