Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc24g00001 ATGCAGCCGAATCATACATGTGGTGGTGCAAATATTTGGGCTGATGTTGCTAGCAGTAGTGAGATATTCTGCCCAGCAGGAATGTATTGCCCAACAACTACAAAAAGTGCTCATTGCAGTAGTGGGCATTACTGTAGGATGGGTTCTATATCCCAGACAAGATGCGTCAAGTTAACTTCATGTAATTCAAATGCCGAGACGCAAAACATGGGTGTGTATGGAATCATGCTCATTGCTGCTTTGAGTACATTGCTGCTTATAATTTATAGCTGTTCTGATCAAGTTCTCAGTACCAGGGAAAGGAGAATGGCGAAGTCCAGGGAAGCAGCAGCTAGAAGTGTAAGGAAGACTTCAAATGCTCAAAAAAGATGGAAGGCTGCAAAAGACGTCGCTAAAAAGAGTGCAAGTGGACTACAAGCTCAACTATCACGAACATTTTCACGTAAGAAGGATGTGGCAGATCCCGAGAAAGTTAAAATTTTGAGTCAAGAAACTCCAGAAGTTGATATACAATTGGTTTCACATTCGCGCCCTGTTATATCAAACATGGCTCCGAGCTCATCGGCTGTGCATAAAGAAAAGGCTAAAGGATCCAGTGATCTGATGCAGATGATGCATGAAATTGAAAATGATCCAGATATTGATGATAACCATAATTTAGAAGTTAAGACTAGAGATAAAACTGTTAAGGGTAAAGCTTCTAAAGAAAAACAACCAGAAACTCATAGCCAGATTTTTAAGTATGCTTATGCTCAATTGGAGAAGGAGAAGGCACAACAACAAGAAAACAAGGATCTTACTTTCTCTAGAGTAGTAAATATGGCTACCAAAAGTGAACAAAGGAAACGACCATTAATGGAAATTTCTTTCAAAGATCTAACTCTCATTTTGAAAGCGCAAAACAAAGTTATATTGAGATGTGTAACAGGGAAAATTAAACCTGGGCGCATTACTGCTGTCATGGGTCCATCAGGGGCCGGTAAGACAACATTTCTTTCAGCAATAGCTGGAAAAGCATTTGGGTGCAAGATGACTGGTTCCATTCTTATAAATGGAAAGGCTGAATTAATCCACTCCTATAAGAAAATTATTGGTTTTGTGCCACAAGATGATATAGTTCATGGAAATCTGACAGTAGAAGAGAATTTACGGTTCAGTGCACAGTGCAGGCTACCTGCTGGCTTGCCAAAACCAGACAAAGTTCTGGTTGTTGAAAGGGTTATTGAATTCTTGGGACTTCAATCTGTGAGGAATTCTTTGGTTGGAACTGTAGAAAAACGAGGGATTTCCGGTGGCCAGAGGAAGCGTGAAGCTCTTCAAGGAGTGAACATATGCATGGTGGTTCACCAACCAAGCTCTGCATTGTTCAATATGTTTGATGACTTGATACTTCTGGCGAAAGGCGGTCTTACTGTGTATCATGGACCTGTCAAGAAAGTTGAAGAATACTTTGCAGGCCTTGGGATTAGTATTCCAGAGCGGATCAATCCTCCTGATTACTTTATCGACATTTTGGAGGGCATAGTAGAATCTGGTGGAAGATCAGGAGTCAGTTATAAAGACCTGCCAGTTAGATGGATGCTTCATAATGGATACCCAGTACCTCTTGATATGCAGAAGTATGCAGCAAAATTTGGTAACTTAACTCCAAATCCAGCTAAAGAAATAGATCCCGATGGCTTCGGACATGAAGAAAGAAGCTTTGCCGGAGAACTATGGCATGATGTTAGACATCATGTAGAATTGGAGGGGGAAAAGATACGATTTAAATTTCTGAAATCCAAGGATTTATCTAACCGGAAAACTCCTGGTATATTCAAGCAATACAAGTACTTCCTTATACGGATTGGGAAGCAGCGACTAAGGGAATCTAAAATCCAAGCCATAGATTATCTAATATTATTACTTGCTGGAGCTTGCTTAGGAGCGCTGAGTAGAGGAAATGATCAGACGTTTGGAGGAGCTGGATACATCCATACGGTGATTGCTGTATCTCTTTTATGTAAAATTGCGGCCTTGCGATCATTTTCTCTGGATAAATTACACTACTGGAGGGAGAGTGATTCTGGCATGAGCAGCTTGGCCTATTTTCTTTCTAGAGACACAATAGATCATTTTAATACTGTGGTCAAGCCTGTGGTGTACCTCTCTATGTTCTATTTCTTCACCTATCCGAGATCAACTTTTGCCGATAATTACATTGTGCTGCTATGTCTAGTATACTGTGTGACTGGAATAGCATATACATTGGCGATCGTATTCAAACCTAGTGCGGCACAGCTATGGTCTGTTCTTCTTCCGGTTGTTATGACCCTTGTTGCGACACAAACCAAAGACAGTACATTTTTGAAGAACGTATCGAAATTATGTTACCCTAAGTGGGCTTTAGAAGCATTTGTAATCGCAAATGCAGAAAGGTATCATGGAGTGTGGATCATAACTCGATGTGGTTCACTAATGAAAAGTGGCTATAATATTCATGATTGGAGTCTGTGCGTATCCATCCTAATTCTTATGGGAGTAATCGCTAGGGCAATAGCTTTTTTCTCCATGCTTATCTTTCAAAAGAAGTGA 2574 0.4044 MQPNHTCGGANIWADVASSSEIFCPAGMYCPTTTKSAHCSSGHYCRMGSISQTRCVKLTSCNSNAETQNMGVYGIMLIAALSTLLLIIYSCSDQVLSTRERRMAKSREAAARSVRKTSNAQKRWKAAKDVAKKSASGLQAQLSRTFSRKKDVADPEKVKILSQETPEVDIQLVSHSRPVISNMAPSSSAVHKEKAKGSSDLMQMMHEIENDPDIDDNHNLEVKTRDKTVKGKASKEKQPETHSQIFKYAYAQLEKEKAQQQENKDLTFSRVVNMATKSEQRKRPLMEISFKDLTLILKAQNKVILRCVTGKIKPGRITAVMGPSGAGKTTFLSAIAGKAFGCKMTGSILINGKAELIHSYKKIIGFVPQDDIVHGNLTVEENLRFSAQCRLPAGLPKPDKVLVVERVIEFLGLQSVRNSLVGTVEKRGISGGQRKREALQGVNICMVVHQPSSALFNMFDDLILLAKGGLTVYHGPVKKVEEYFAGLGISIPERINPPDYFIDILEGIVESGGRSGVSYKDLPVRWMLHNGYPVPLDMQKYAAKFGNLTPNPAKEIDPDGFGHEERSFAGELWHDVRHHVELEGEKIRFKFLKSKDLSNRKTPGIFKQYKYFLIRIGKQRLRESKIQAIDYLILLLAGACLGALSRGNDQTFGGAGYIHTVIAVSLLCKIAALRSFSLDKLHYWRESDSGMSSLAYFLSRDTIDHFNTVVKPVVYLSMFYFFTYPRSTFADNYIVLLCLVYCVTGIAYTLAIVFKPSAAQLWSVLLPVVMTLVATQTKDSTFLKNVSKLCYPKWALEAFVIANAERYHGVWIITRCGSLMKSGYNIHDWSLCVSILILMGVIARAIAFFSMLIFQKK 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc24g00001 857 Coils Coil 250 270 - -
Stsc24g00001 857 Gene3D - 286 440 IPR027417 -
Stsc24g00001 857 SMART AAA_5 314 469 IPR003593 GO:0016887
Stsc24g00001 857 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 288 531 IPR003439 GO:0005524
Stsc24g00001 857 Pfam ABC-2 type transporter 449 857 IPR043926 GO:0140359
Stsc24g00001 857 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 440 844 - -
Stsc24g00001 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 473 IPR027417 -
Stsc24g00001 857 Pfam ABC transporter 307 439 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc24g00001 Stsc-Chr24 8577 15413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc24g00001 304 455 Calmodulin-binding Proteins AT2G36910 27.950 9.01e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc24g00001 - - gmx:100783798 1342.41