Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc249g00010 ATGGTGAAGTACTCCAGAGAACCCGAAAATCCCACCAAGTCTTGCAAGGCTAGAGGCTCTGATCTCAGGGTTCATTTCAAGAATACCAGAGAGACTGCGTTTGCAATCAGGAAGCTGCCCCTTGTTAAGGCAAAGAGGTACTTGGAGGATGTTTTGGCTCACAAACAGGCTATTCCATTCAGACGCTTCTGCGGTGGTGTTGGAAGGACTGCCCAGGCCAAGAACAGACATTCCAATGGACAAGGACGCTGGCCTGTGAAATCAGCCAACTTCATACTTGATTTGCTCAAGAATGCTGAGAGCAATGCTGAGGTGAAAGGCTTGGATGTGGATGCTCTTTACATTTCTCATATCCAGGTTAATCAAGCACAGAAACAAAGGCGCCGCACCTACCGTGCTCATGGAAGAATCAATCCTTACATGTCATCACCTTGCCACATAGAGTTGATTTTATCTGAGAAGGAAGAGCCTGTGAAGAAAGAGCCGGAGACCCAGTTGGCAACAAGCAAGAAGAAATCTCAAGCTATTCGCAGTGGTGCTTCATCCTAA 549 0.4718 MVKYSREPENPTKSCKARGSDLRVHFKNTRETAFAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSANFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKSQAIRSGASS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc249g00010 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Stsc249g00010 182 FunFam 60S ribosomal protein L17 1 175 - -
Stsc249g00010 182 MobiDBLite consensus disorder prediction 168 182 - -
Stsc249g00010 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Stsc249g00010 182 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Stsc249g00010 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Stsc249g00010 182 MobiDBLite consensus disorder prediction 154 182 - -
Stsc249g00010 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Stsc249g00010 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Stsc249g00010 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc249g00010 Stsc-Chr249 25802 27464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc249g00010 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 86.813 4.08e-116 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc249g00010 K02880 - zju:107428381 344.739