Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc249g00003 ATGGCGGAGGAAGACGAGGTTCAGATTCAAGAAAACGAGGAGTCAGCCCGGCCCGAATTTCCGACGGGTCGGGTCAAGAAGATAATGAGGCTAGACGAGGAAGTAAATAGAGTGAGCGGAGAAGCGCTGTTCCTGGTGTCGCTCTCCACCGAGTTTTTCCTCCACTTCCTGGCTGAGAAATCGGCGCGCGTCGCCATCGAGAAGAAGCGCAAGACGGTTACCGTTGACCACCTTAGGGTCGCCGTCAAGAGGCACCAACCTACCAGAGATTTCCTCCTCGACTCTCTCCCTCTGCCTCCTCAGCCCAAAAACCTCCCTACTTCCACCGCCGCTGACCGGAGAAAAGCTGAGAAGCCCGCCCCTGCCGGCACTCGTCGCATCGATCAGTTCTTCCGGAAGCCCGATGCAGAAGCTGCTCTGGTGGCAGATCCTGAAGCAGAAGCTCCAGCGGATGCTGCTCCGGAAGCCCACGCAACTGGAGACGCTGAAGCCGAAGTTACTGCCGAAGCTGAAGCAACGGTTCAAGTAGATGAGTCTTAG 540 0.5722 MAEEDEVQIQENEESARPEFPTGRVKKIMRLDEEVNRVSGEALFLVSLSTEFFLHFLAEKSARVAIEKKRKTVTVDHLRVAVKRHQPTRDFLLDSLPLPPQPKNLPTSTAADRRKAEKPAPAGTRRIDQFFRKPDAEAALVADPEAEAPADAAPEAHATGDAEAEVTAEAEATVQVDES 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc249g00003 179 MobiDBLite consensus disorder prediction 1 21 - -
Stsc249g00003 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 19 82 IPR003958 -
Stsc249g00003 179 MobiDBLite consensus disorder prediction 110 133 - -
Stsc249g00003 179 Gene3D Histone, subunit A 1 97 IPR009072 GO:0046982
Stsc249g00003 179 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 10 126 - -
Stsc249g00003 179 MobiDBLite consensus disorder prediction 91 179 - -
Stsc249g00003 179 SUPERFAMILY Histone-fold 5 100 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc249g00003 Stsc-Chr249 7274 8643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc249g00003 9 138 CCAAT-HAP5 Transcription Factor Family AT5G43250 61.832 2.08e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc249g00003 CBFD_NFYB_HMF 2.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc249g00003 - - adu:107468882 234.958