Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc249896g00001 AAAAGCGCTGCGTCTACTCAACCAAGTGAAGAATCTGAAAAAACAGGTTTTCATTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTCTAGAGACAGAGACAGACTTTTCGAGAGATGCTCGTGCCATCCGTGAACGAGCTCTTAAGCAAGCAGAAGAGAGTTTGAAGGGGAAAGCCACAGGTTCGGAGGATGGCAAATTATATAAGGGAATGAACAGTTACAAAGATTACAAGGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGCGAAAAGGCTGGTGGTTCACATGGTCCTCTCAGGGCTTCGGCTCATATAAGAGTTTCAGCGAGATTCGATTATCAGCCTGATATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCCTGTAAATTTATGCATGATCGAGGCGATTACAAGTCTGGGTGGCAGTTGGAGAAAGAATGGGATGAAGCTGAGAAGGCAAGAAGGATGAGATTGGCTGCAGGTGAAGATGCGGATGAGGAAAGTGCTGATGTGGCTGACAGCGATGATGAAGATGAATTACCATTTGCATGTTTTATTTGTCGCAAGCCTTTTGCAGATCCCGTTGTGACCAAATGCAAGCACTACTTCTGCGAGCATTGCGCATTAAAG 666 0.4414 KSAASTQPSEESEKTGFHFESSKEIQVQHDSKATATLETETDFSRDARAIRERALKQAEESLKGKATGSEDGKLYKGMNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARRMRLAAGEDADEESADVADSDDEDELPFACFICRKPFADPVVTKCKHYFCEHCALK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc249896g00001 222 MobiDBLite consensus disorder prediction 13 27 - -
Stsc249896g00001 222 SMART c3hfinal6 119 146 IPR000571 GO:0046872
Stsc249896g00001 222 MobiDBLite consensus disorder prediction 1 49 - -
Stsc249896g00001 222 Gene3D - 117 150 - -
Stsc249896g00001 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 222 IPR013083 -
Stsc249896g00001 222 CDD RING-HC_RNF113A_B 189 222 - -
Stsc249896g00001 222 PANTHER ZINC FINGER PROTEIN 183 4 222 IPR039971 -
Stsc249896g00001 222 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 145 IPR000571 GO:0046872
Stsc249896g00001 222 SUPERFAMILY RING/U-box 194 221 - -
Stsc249896g00001 222 MobiDBLite consensus disorder prediction 35 49 - -
Stsc249896g00001 222 FunFam Zinc finger CCCH domain-containing protein 1 117 151 - -
Stsc249896g00001 222 ProSiteProfiles Zinc finger C3H1-type profile. 119 147 IPR000571 GO:0046872
Stsc249896g00001 222 SUPERFAMILY CCCH zinc finger 118 150 IPR036855 GO:0046872
Stsc249896g00001 222 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc249896g00001 Stsc-Chr249896 110 775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc249896g00001 2 222 C2H2 Transcription Factor Family AT1G01350 73.303 2.12e-117 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc249896g00001 zf-CCCH 3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc249896g00001 K13127 - gmx:100787434 387.111