Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc248620g00001 AGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCCGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGTCGTTCTAGTGCGTTGTAG 279 0.4373 SGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc248620g00001 92 PRINTS Ribosomal protein S12 signature 51 68 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 PRINTS Ribosomal protein S12 signature 1 16 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 PRINTS Ribosomal protein S12 signature 16 31 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 PRINTS Ribosomal protein S12 signature 84 92 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 PRINTS Ribosomal protein S12 signature 68 84 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 PRINTS Ribosomal protein S12 signature 32 51 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 ProSitePatterns Ribosomal protein S12 signature. 17 24 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 Gene3D - 1 91 IPR012340 -
Stsc248620g00001 92 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 13 89 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 Pfam Ribosomal protein S12/S23 9 87 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 3 91 IPR006032 GO:0003735|GO:0005840|GO:0006412
Stsc248620g00001 92 SUPERFAMILY Nucleic acid-binding proteins 9 89 IPR012340 -
Stsc248620g00001 92 CDD Ribosomal_S12 13 84 IPR005679 GO:0003735|GO:0006412|GO:0015935
Stsc248620g00001 92 NCBIfam 30S ribosomal protein S12 7 89 IPR005679 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc248620g00001 Stsc-Chr248620 624 902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc248620g00001 14 73 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 44.118 2.71e-09 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc248620g00001 K02950 - soe:130461791 182.956