Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc248561g00001 TTTACGTGTGATGTCGAGGAGGATTATATTCCGAAGGCTGGAATGACATTTAAAACACTTGCTGAGGTTGGTTTGTTCTACAAAGAGTATGCAAAACGTGCAGGGTTCTCTACTAAAATAAGAAACACAAATAGATGTAAGGAGACAAAGGAAGAAATCAATCAACTCATAACATGTAACAGACAAGGACAATGGACATCTGAGGTACCTTACGTTGAGAAGACAAAGCCTATCTGTGGTGCAAACTGTCCCGCACGGATTTATGCTCACGTAATAAAGACAACTCGAATGTGGCGCATTTCAAAAGTAGTTCTTCGTCATTCGCATCCATGCTTCCCAGAGCAAGCTCAGATGTTAGCACAACACAGGGAGCTTAGCTTGGAAGTTCGTCGTACCATAGAAAACAATGATGCATCCGGTATTAGACCATGTTAA 435 0.4138 FTCDVEEDYIPKAGMTFKTLAEVGLFYKEYAKRAGFSTKIRNTNRCKETKEEINQLITCNRQGQWTSEVPYVEKTKPICGANCPARIYAHVIKTTRMWRISKVVLRHSHPCFPEQAQMLAQHRELSLEVRRTIENNDASGIRPC 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc248561g00001 144 Pfam FAR1 DNA-binding domain 26 113 IPR004330 -
Stsc248561g00001 144 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 7 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc248561g00001 Stsc-Chr248561 548 982 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc248561g00001 FAR1 2.1e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc248561g00001 - - aip:110271906 179.489