Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc248469g00001 ATGCTTTATGTCTCTAAGATGATTCCTGCATCTGACAAGGGTCGTTTCTTTGCTTTCGGTCGTGTTTTCTCCGGAAGGGTGTCAACTGGTCTCAAGGTTAGAATTATGGGACCAAATTACGTTCCTGGTGAGAAGAAAGATCTGTACGTTAAAAGTGTGCAAAGGACTGTCATTTGGATGGGAAAGAGGCAAGAAACAGTGGAGGACGTTCCTTGTGGTAACACAGTTGCCATGGTTGGTTTGGATCAATTTATCACCAAGAATGCCACATTGACAAATGAGAAGGAAGTCGATGCCCACCCCATCCGAGCCATGAAGTTCTCTGTCTCACCTGTCGTGCGTGTTGCTGTTCAGTGTAAGGTTGCATCGGATCTTCCTAAGCTTGTTGAAGGTCTCAAGAGGTTGGCCAAATCCGATCCTATGGTTCTCTGTACTATTGAAGAATCTGGAGAGCACATTGTTGCTGGTGCTGGGGAGCTTCATTTGGAAATTTGTTTGAAGGACTTGCAAGAAGATTTCATGGGAGGAGCTGAGATTATCAAGTCAGACCCTGTTGTGTCTTTCC 565 0.4531 MLYVSKMIPASDKGRFFAFGRVFSGRVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTIEESGEHIVAGAGELHLEICLKDLQEDFMGGAEIIKSDPVVSF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc248469g00001 188 Pfam Elongation factor Tu domain 2 18 91 IPR004161 GO:0005525
Stsc248469g00001 188 SUPERFAMILY EF-G C-terminal domain-like 108 184 IPR035647 -
Stsc248469g00001 188 Gene3D Elongation Factor G (Translational Gtpase), domain 3 109 187 - -
Stsc248469g00001 188 Pfam Elongation Factor G, domain III 111 173 IPR041095 -
Stsc248469g00001 188 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 188 - -
Stsc248469g00001 188 CDD EF2_II 1 94 - -
Stsc248469g00001 188 FunFam Translation elongation factor 2 110 187 - -
Stsc248469g00001 188 CDD EF2_snRNP_III 111 183 - -
Stsc248469g00001 188 FunFam Translation elongation factor 2 1 108 - -
Stsc248469g00001 188 Gene3D Translation factors 1 108 - -
Stsc248469g00001 188 SUPERFAMILY Translation proteins 1 100 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc248469g00001 Stsc-Chr248469 1 1092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc248469g00001 1 188 Eukaryotic Initiation Factors Gene Family AT1G56070 95.745 7.00e-128 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc248469g00001 K03234 - tcc:18594569 373.244