Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2483g00002 ATGGCTGCTGCATCACAACATGAAGTTGAGCATCTTAAGAAGGCTTTGGGATGGGCAGCAAGAGATTCTACTGGTTTTCTTTCCCCTTTTAACTTCTCAAGAAGGGAAAGTGGAGAGAAAGATGTGAGATTGAAAATAATGTACTGTGGAATATGCCACTCTGACCTCCACTTGCTTAAGAACGACTTCGGCGTCTCCATTTATCCATTAGTTCCAGGGCATGAGATAGTTGGAGAAGTGACAGAGGTTGGAAACAAGGTAGAAAAGTTTAAGATTGGGGACAAAGTAGGTGTGGGAACCTTGGTTGACTCATGCCGTTCATGCCAAAGCTGTGCTAACAATCTTGAGAGTTATTGTCCAAAGAAAATTCCCACCTATGGCTTCAAGAACACCGATGGCACCATCACATATGGAGGCTTTTCGGATTCAATGGTGGCGCACGAGGACTTCGTCGTTCGAATTCCGGACGAACTACCTCTTGATGCAGCTGCTCCTCTGCTGTGTGCTGGGATTACAGTTTATAGCCCGCTCCGGTATTTCGGGCTTGATAAGCCCGGTTTACATCTCGGGGTGGTTGGTCTTGGCGGATTAGGCCACATGGCTGTTAAGTTTGCCAAAGCTTTTGGTGCTAAGGTCACTGTTATTAGTACCTCTCCTAATAAAAAGGAGGAGGCTTTGGAAAATTTGGGTGCTGATTCCTTTGTCATAAGCACTGACCAAGATCAGATGCAGGGTGTTATGGGTACAATGGATGGTATTATTGACACGGTTTCTGCAGTTCATCCTCTGTTGCCTTTGCTTTGTTTGTTGAAGTCTCATGGAAAGCTTGTATTGGTTGGTGCAGTAGCCAAGCTAGAACTGCCGGTCTTTCCTTTAATCATGGGTAAGCATTGCTCGGTCATTCCCATGGACTATGTCAACACTGCAATGGAGCGTCTTCTCAAAGCAGATGTCAAGTATAGATTTGTCATTGATATAGCAAACACACTCAACTCTACCACCTCTTAA 1008 0.4504 MAAASQHEVEHLKKALGWAARDSTGFLSPFNFSRRESGEKDVRLKIMYCGICHSDLHLLKNDFGVSIYPLVPGHEIVGEVTEVGNKVEKFKIGDKVGVGTLVDSCRSCQSCANNLESYCPKKIPTYGFKNTDGTITYGGFSDSMVAHEDFVVRIPDELPLDAAAPLLCAGITVYSPLRYFGLDKPGLHLGVVGLGGLGHMAVKFAKAFGAKVTVISTSPNKKEEALENLGADSFVISTDQDQMQGVMGTMDGIIDTVSAVHPLLPLLCLLKSHGKLVLVGAVAKLELPVFPLIMGKHCSVIPMDYVNTAMERLLKADVKYRFVIDIANTLNSTTS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2483g00002 335 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Stsc2483g00002 335 CDD CAD1 17 325 IPR047109 GO:0016616
Stsc2483g00002 335 SMART PKS_ER_names_mod 19 324 IPR020843 GO:0016491
Stsc2483g00002 335 Gene3D - 169 296 - -
Stsc2483g00002 335 PANTHER ALDEHYDE REDUCTASE 7 297 IPR047109 GO:0016616
Stsc2483g00002 335 FunFam Uncharacterized protein 18 168 - -
Stsc2483g00002 335 Pfam Zinc-binding dehydrogenase 196 307 IPR013149 -
Stsc2483g00002 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 296 IPR036291 -
Stsc2483g00002 335 FunFam Cinnamyl alcohol dehydrogenase 169 303 - -
Stsc2483g00002 335 SUPERFAMILY GroES-like 22 186 IPR011032 -
Stsc2483g00002 335 Pfam Alcohol dehydrogenase GroES-like domain 40 153 IPR013154 -
Stsc2483g00002 335 FunFam Putative cinnamyl alcohol dehydrogenase 6 298 326 - -
Stsc2483g00002 335 Gene3D - 18 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2483g00002 Stsc-Chr2483 1782 3950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2483g00002 13 331 Monolignol Biosynthesis Gene Families AT4G37990 65.230 1.59e-144 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2483g00002 K23232 - gmx:100816901 482.256