Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc247g00005 ATGGCTGTGGTCCAACATATCTCAACCAGCACAATCCAAGCACCGAGTCAACCCGACTCACCTTGCAAAATCCACTTAACTCCATGGGATCTTGAGCCCCTCCCAATCAGGATGAACCAAAAAGGCCTTCTTTTTCACCACAAACCATCATCATCACAAATTCAGCATCTCAAACACTCGCTTTCCACCACCCTCGCACTGTTTCCATCCCTCGCCGGCTGCCTCATATTAACGGAAGGCGAAGAAAACACCACCTATTGTCACCTTCTCTGCAACAACAAAGGATCCCTCTTTGTCCATGCCATAGCAGAGAACACAAGTGTTGACGACATTCTTCAACCAAAATACGTTCCTTCCGTTGTCAACTCCTTCTTCGCCCTTAACGGTGTTAGAAACTTCGAAGGCACGTCTCAGCCGTTGCTTGCTGTGCAAGTCACGGAGGTAGTTGACGGCGTCTTCATCGGCTTCACGATCAACCACGTGGTCGCCGACGGTGAGTCGTTGTGGCACTTTGTCAATTCATGGTCCGAAATCTCACGTGGTTTCCATAAATTAACCAAAGATCCTTCACTGGATCGGTTTTTTCTCGATACAATTGAACCTCCAATTCCAATACCAACACCAAAACCCTCTCCATTCACAAAGGCGGAGAATCAGAACTCTGAAATAGCATCGGTTAGGATCTTTCATTTCACAAAAGAGAAAATAGCACAGCTCAAAACGAAGGCTAATGCAGAGGCCAAAACAGAGAAGATATCTTCGCTGCAAGCGCTTTTGACACACTTTTGGATATCCGTGATTCGTTGCCATTCCTTGGACCCGCAAGAAGAGGTTCTCTTCTGCTTGGCGATCGGCGTAAGAGGGCGGATTGTTCCGCCGTTGCCGGAGAATTATTTCGGGAACGCTTTGCAGATTGGTGTTGTGAGAATGAAAGCAGGGGAGCTGCTTCAAGGTGGGATTGCAAAGGGTGCTATGGAGATCAATAAGATGGTGGCTTCTCACAGTCATGAGAAGGTGAGGAGCCACTATGTTTCTATGGCGGAGAAACCGACCTTGCTTCGACTCGGGGGCACCATTGGTGGGAAGGCTTTGGCCTTTGGAAGCTCGCCAAGGTTCAATGTTTACGGAAATGACTTTGGTTGGGGGAAGCCTGTAGCGGTTAGGGCTGGTTCGAATATGAGTGAGGGAATGGTTGCTTTGTTTGGAGGGAAGGAAGAAGGGAGTATTGACGTTCAAGTTTGCCTCCCTTATGAAATCTTGGAAGCCATGGAAGGTGATTCTGGGTTCATGGTCATGGATGCCTTTACCGTCTAA 1314 0.4817 MAVVQHISTSTIQAPSQPDSPCKIHLTPWDLEPLPIRMNQKGLLFHHKPSSSQIQHLKHSLSTTLALFPSLAGCLILTEGEENTTYCHLLCNNKGSLFVHAIAENTSVDDILQPKYVPSVVNSFFALNGVRNFEGTSQPLLAVQVTEVVDGVFIGFTINHVVADGESLWHFVNSWSEISRGFHKLTKDPSLDRFFLDTIEPPIPIPTPKPSPFTKAENQNSEIASVRIFHFTKEKIAQLKTKANAEAKTEKISSLQALLTHFWISVIRCHSLDPQEEVLFCLAIGVRGRIVPPLPENYFGNALQIGVVRMKAGELLQGGIAKGAMEINKMVASHSHEKVRSHYVSMAEKPTLLRLGGTIGGKALAFGSSPRFNVYGNDFGWGKPVAVRAGSNMSEGMVALFGGKEEGSIDVQVCLPYEILEAMEGDSGFMVMDAFTV 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc247g00005 437 Gene3D - 209 425 IPR023213 -
Stsc247g00005 437 Gene3D - 1 202 IPR023213 -
Stsc247g00005 437 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 430 - -
Stsc247g00005 437 Pfam Transferase family 4 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc247g00005 Stsc-Chr247 41441 43315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc247g00005 37 424 Monolignol Biosynthesis Gene Families AT5G48930 29.197 2.24e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc247g00005 - - gmx:100797643 492.656