Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2479g00003 ATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGTCCAGAGTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTCTGTTGCGCTCAAGATTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTAAAGGATTTCAGAACCCTCCAAACCCATTACAAGAGAAAGCACGGCGTGAAACCCTATGCGTGCCGGAAATGTGGCAAGTCATTCGCCGTGAAGGGCGATTGGCGGACTCACGAGAAGAACTGCGGCAAGATATGGTATTGTTTGTGTGGCTCTGATTTCAAGCATAAGAGGTCCTTGAAGGATCATGTCAAGGCCTTTGGCTATGAACATGGTTCTTTCGGTATTGATTGCATGCAAGAGGAGGAAGAAGCAGCTTCCGAAGTTGAACATGATGATGATTGCTCGTTTTAA 438 0.468 MHMWGHGSQYRKGPESLKGTQPTAMLRLPCFCCAQDCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYACRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVKAFGYEHGSFGIDCMQEEEEAASEVEHDDDCSF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2479g00003 145 PANTHER ZINC FINGER PROTEIN WIP2 1 140 IPR043584 GO:0003700|GO:0010468
Stsc2479g00003 145 SUPERFAMILY beta-beta-alpha zinc fingers 53 88 IPR036236 -
Stsc2479g00003 145 Gene3D Classic Zinc Finger 53 89 - -
Stsc2479g00003 145 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 88 IPR013087 -
Stsc2479g00003 145 FunFam Zinc finger protein WIP2 37 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2479g00003 Stsc-Chr2479 5085 5522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2479g00003 1 142 C2H2 Transcription Factor Family AT3G57670 80.282 4.46e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc2479g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2479g00003 - - gmx:100794446 295.049