Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc247467g00001 ATGGCACAAGAACATATCCAAGTTGAGGGATTTGGTGATGGAGAATGGCAAAGAGTTAACCGTAGAAAGCCTAGATTCGGTACTCAGCCTGGACACAAACAAGTTTGGAACGGTTACGGTGGGAGATATTCATGGAGGAAGAAAGACTTTAAGGCTATGGAAAATAGATTGGTGACGATTTTTATAGATAATCTCCCAAAATCGACAACAATTGACTGGTTGTGGACAGTTTTTGGATTGGAAGGGAAGATAGCTGATGTATACCTCTCTAAGAAAGTCAGGCCCAAAAACCCTTTACCATTTGCATTTGTCAGGTTTGAAGATTGTGAAGCAGCACACAGGGCAATTGATAGAAGAAATGGGTGGGTGGTGTGGGGTTGCAAACTTCGAGTGTCTGAAGCAAAATATAAAAGAAATCAGTTAAGAAAGGATAAGGAAGTTAATGAGCACAAGAAGGAGGATACTACAGAGAGACATACGGTGACTGGACTTGACAAAAAGAAGAACACAAGGGTCATAGGGATGAAGTCATACAAGGAAGCTGTAACAGGTTCAGAAGGAAGTCTTGAAGTAGTAAACATGAGAGATGACAACGCTATGTTTGATTTAGGGGGCTCAAAAATTGAATTAATGGCTTGTGAAGAGACTAAGAAGAAACTTGAAAAAAGTGTTGTGGGTGAAACTCTGAACCCTTTTATTTTTAATGAGTTGAAGGAAGCAGTAAAGAGAGATTGGGATTCCATTGTGGAGATAAAGAAGATGGGGGACACCAAAATTCTACTAACTTTCGACACGGAGGAAAATCTATCT 810 0.4 MAQEHIQVEGFGDGEWQRVNRRKPRFGTQPGHKQVWNGYGGRYSWRKKDFKAMENRLVTIFIDNLPKSTTIDWLWTVFGLEGKIADVYLSKKVRPKNPLPFAFVRFEDCEAAHRAIDRRNGWVVWGCKLRVSEAKYKRNQLRKDKEVNEHKKEDTTERHTVTGLDKKKNTRVIGMKSYKEAVTGSEGSLEVVNMRDDNAMFDLGGSKIELMACEETKKKLEKSVVGETLNPFIFNELKEAVKRDWDSIVEIKKMGDTKILLTFDTEENLS 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc247467g00001 270 SUPERFAMILY RNA-binding domain, RBD 51 140 IPR035979 GO:0003676
Stsc247467g00001 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 136 IPR000504 GO:0003723
Stsc247467g00001 270 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 59 152 - -
Stsc247467g00001 270 CDD RRM_SF 60 132 - -
Stsc247467g00001 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 129 IPR000504 GO:0003723
Stsc247467g00001 270 SMART rrm1_1 59 132 IPR000504 GO:0003723
Stsc247467g00001 270 Gene3D - 52 162 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc247467g00001 Stsc-Chr247467 105 914 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc247467g00001 33 137 Eukaryotic Initiation Factors Gene Family AT1G22760 32.381 7.40e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc247467g00001 K12891 - aip:107633172 80.8777