Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc246g00003 ATGGCTTTGAGGGCAGCCGCAGCTGCGGCTGCAGTTGCAGCGCAGTCTTCGTCGCGTGGTTTATGGCGGCTGCTCTCAAGTCGTTCTGCTTATCCACCGTCGGCTACTGCCACAGCATTTGCTCGACAGACGGTGGAGCCCAAATCCTCCCTCTTTGTTTCCGGGCTTAACAAACGGACAACATCGGAACGCCTACTCCAAGAATTTTCTAAGTTTGGCGCAGTTGTTCGCGCCAGGGTGATGATCGATAGAACAGGTTCTTCTAAAGGGTATGGATTTGTACAATATGCCACTATAGAAGAGGCTACAAAGAGCATCGAAAGCATGAATGGAAAGTTTTTGGATGGTTGGGTTATATTTGTAGAGTATGCCAAGTCTGTCCCAGAACCTACACAGCAAACTCGCCGGCATCTCCGGCATTAG 423 0.5035 MALRAAAAAAAVAAQSSSRGLWRLLSSRSAYPPSATATAFARQTVEPKSSLFVSGLNKRTTSERLLQEFSKFGAVVRARVMIDRTGSSKGYGFVQYATIEEATKSIESMNGKFLDGWVIFVEYAKSVPEPTQQTRRHLRH 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc246g00003 140 CDD RRM_SF 51 122 - -
Stsc246g00003 140 PANTHER NUCLEOLAR PROTEIN 8 33 133 - -
Stsc246g00003 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 126 IPR000504 GO:0003723
Stsc246g00003 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 116 IPR000504 GO:0003723
Stsc246g00003 140 SMART rrm1_1 50 122 IPR000504 GO:0003723
Stsc246g00003 140 Gene3D - 10 138 IPR012677 -
Stsc246g00003 140 SUPERFAMILY RNA-binding domain, RBD 43 137 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc246g00003 Stsc-Chr246 22310 25379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc246g00003 35 128 Eukaryotic Initiation Factors Gene Family AT4G34110 34.737 5.35e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc246g00003 - - adu:107488830 175.252