Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc245g00004 ATGATGAGTGAAAATGATGACAGTGGGTGGCAGACCTATTGGTCGAGAAGAAGACGACCTCATCTGAGGCGAGCGCATGCCAACGAAAGAGGGGTATCCAAGTGGAGAGACATTGAAAGGAGCTCATACTCAGTGTTTGTGGATGGCCTGCCGCAGGAAACTGCCAAAGGAACCCTGTTCAAAATCTTTGGGTGGGCTAGCTTAGTGACAGATGTTTACATATCGAGGAAACGTAGGAAAGGGACTAACAAACTCTTCGCCTTCGTGAGGTTTGACTCTAGAGGAGGGGCAGAAAGGGCGGTGACGAAATTGAACAGCACGTTTATAGGGACTGCGAGGATGGCAGTGAAGCTTGCAGTGTTTCAGCGAAGAGAGATGGCGGGGAATCAAAGGTGGAACCACAGAGGCCGTGATGAGAGGAGTGACAGTACGCAGTTACGGACCAATGAGGTGGTTATGAAGAAGGAGGGCGGAAAGGAAATACCGAGTGCTGTCCCAGAAAAGAAATCGATTAAAACTAGGGATGTTGCACTGGGACATGAGGGTCTGTGCTCTCTATTCTTTGAATTAAGACCACAATGGGGTTTCTCTTACATGAGATCCAGAAGAATTTGGATTGAGGTGACTGGTGTACCGATTTATCTGTGGTCGGAGGATATATTCATGAAGTTGGGTAAGTTATGGGGGAAGCTGGTAATGATGAATGAGTTAACTGACTATTATTTATCATACACTTGTGCTAGAATTTTGATCGACTCATTCCAATGGGAGATGATCCACGAGTGGGTTACGCTTGAGGATGGTGATAAGAAATTCGCTGTATTTGTTAAAGAGTTCGGGCGTGAAATTTACAGCGCCCAGGCTCATCCCGAGACGTGCCATGAGGATAGTCAATGCCGCCATGATAATGACGATGTCAATGGGGAGTGTAATAGTGATTTGGTTCCTGATTCTGTAATGGCGGAGAAGTCTGAAAGAGTGGCGGGAGTAGAGCAGGAGGGAAGAAGAAAAGACGTTGGTGTAGGGAGTATCTTCTGGGACCCACTGATTGAGGACATAATCATGAAGAAGGATGAGGAGATCGAGGGGAGTTTTGGATATAATACGTTGGGAGATGGAGCGGTAGTTTCTCTCGAGGAAGCTATTAATGAGAGTACATGA 1161 0.4668 MMSENDDSGWQTYWSRRRRPHLRRAHANERGVSKWRDIERSSYSVFVDGLPQETAKGTLFKIFGWASLVTDVYISRKRRKGTNKLFAFVRFDSRGGAERAVTKLNSTFIGTARMAVKLAVFQRREMAGNQRWNHRGRDERSDSTQLRTNEVVMKKEGGKEIPSAVPEKKSIKTRDVALGHEGLCSLFFELRPQWGFSYMRSRRIWIEVTGVPIYLWSEDIFMKLGKLWGKLVMMNELTDYYLSYTCARILIDSFQWEMIHEWVTLEDGDKKFAVFVKEFGREIYSAQAHPETCHEDSQCRHDNDDVNGECNSDLVPDSVMAEKSERVAGVEQEGRRKDVGVGSIFWDPLIEDIIMKKDEEIEGSFGYNTLGDGAVVSLEEAINEST 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc245g00004 386 Pfam Domain of unknown function (DUF4283) 199 251 IPR025558 -
Stsc245g00004 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 121 IPR000504 GO:0003723
Stsc245g00004 386 SUPERFAMILY RNA-binding domain, RBD 35 140 IPR035979 GO:0003676
Stsc245g00004 386 CDD RRM_SF 45 117 - -
Stsc245g00004 386 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 41 142 - -
Stsc245g00004 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 111 IPR000504 GO:0003723
Stsc245g00004 386 SMART rrm1_1 44 117 IPR000504 GO:0003723
Stsc245g00004 386 Gene3D - 15 152 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc245g00004 Stsc-Chr245 21465 22806 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc245g00004 20 105 Eukaryotic Initiation Factors Gene Family AT3G11400 33.721 7.78e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc245g00004 K12891 - ahf:112794598 132.109