Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc245785g00001 ATGTATCCATCACTATTCCCGCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCATCTTTCCTTGATGGCAGAGATGACGCAACTAATGGGCTGATGTGGCTGAGAGGTGGAGCAGGCGACCAAGGTCTGAATTCCCTCAATTTTCAAAGTGTGGGTATGCTGCCATGGATGCAGCAGAGGCTCGATCCGGCTTTGCTTGGAAATGATCATAATCAGCAGTACCAAGCCATGTTAGCAGCTGGTTTGCAGAACATAGGGAGTGGTGAACTCTTGAGGCAACAAATGATGAATTTCCAACAGCCTTTCAATTATCTCCAACAATCAGGAAATGTCAACACTCCTATCCAGCTTCAGCAGCAGCAAACGATGCAGCAAGCAGTGACTTCTAATATCTTGCAGCCACAAGCCCAAGTATTGACAGAGAACATGTCTCAGCAGCTCTTTCAGAAACCACATAACAACCGAGAAGACCATTCGCAGCAGCAGCAGCAGCACACTTATCAGGATGCACTTTTAGTTCAGAGTGACCAGCTCCACCAAAGGCAACACTCTAGTTTGCCTTCACCATCGTACTCTAAACCAGAGTTTGCAGATTCAAGCATTAAATTTGAAGGATCAGGTTCACCAGGACAGAACATGCTTGGTTCACTTTGTCCTGAAGGTAGCAGCAATCTCTTGAACTTATCAAGAGGTGGTCAGTCCATACCAGCAGAACAGTTATCCCAACAATCATGGCCCCCGAAGTACACACCTCTGCAGGTCAATGCTTTTGCCAACTCAATGTCACATGTGCAATATTCTGGAAAAGATATTGCAGTTGCATCACCGCATCGTAATTCAGATGCTCAGAATCCAACTCTCTTTGGAGTCAATATTGATTCGTCTGGTCTTCTACTCCCCACCACTGTCCCCCATTACACCACTTCGTCTGCTGATACCGACTCCTCAACAATGCCATTAGGGGATTCTGGATTCCAGGGCCCTCTGTATGCTTGCATGCAAGAGTCATCGGAGTTAATGCAAAGTGCGGGACAAGTTGACCCTCAAAACCAGACACCGACGTTTGTCAAGGTTTATAAATCAGGGTCCGTTGGGCGGTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGCGAGAAGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATATTCTTCTCCTTGGGGACGATCCTTGGGAATCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAGATGGGAGAAGCCGTAGAATCTCGTGACGGTGTTCCTGGCCTACCATCAATAGGCGAATATTGA 1386 0.4661 MYPSLFPLRLKRPWHPGTSSFLDGRDDATNGLMWLRGGAGDQGLNSLNFQSVGMLPWMQQRLDPALLGNDHNQQYQAMLAAGLQNIGSGELLRQQMMNFQQPFNYLQQSGNVNTPIQLQQQQTMQQAVTSNILQPQAQVLTENMSQQLFQKPHNNREDHSQQQQQHTYQDALLVQSDQLHQRQHSSLPSPSYSKPEFADSSIKFEGSGSPGQNMLGSLCPEGSSNLLNLSRGGQSIPAEQLSQQSWPPKYTPLQVNAFANSMSHVQYSGKDIAVASPHRNSDAQNPTLFGVNIDSSGLLLPTTVPHYTTSSADTDSSTMPLGDSGFQGPLYACMQESSELMQSAGQVDPQNQTPTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSPEDIQKMGEAVESRDGVPGLPSIGEY 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc245785g00001 461 MobiDBLite consensus disorder prediction 178 219 - -
Stsc245785g00001 461 Pfam AUX/IAA family 346 438 IPR033389 -
Stsc245785g00001 461 Gene3D - 350 443 - -
Stsc245785g00001 461 ProSiteProfiles PB1 domain profile. 354 438 IPR000270 GO:0005515
Stsc245785g00001 461 SUPERFAMILY CAD & PB1 domains 352 428 - -
Stsc245785g00001 461 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 443 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc245785g00001 461 MobiDBLite consensus disorder prediction 205 219 - -
Stsc245785g00001 461 MobiDBLite consensus disorder prediction 178 196 - -
Stsc245785g00001 461 FunFam Auxin response factor 349 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc245785g00001 Stsc-Chr245785 8 2723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc245785g00001 1 452 B3 DNA Binding Superfamily AT5G37020 55.965 3.56e-149 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc245785g00001 AUX_IAA 1.3e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc245785g00001 - - gmx:100780393 740.725