Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc245269g00001 ACAATGATAATTGGGGGAAACGATACAACCACGGTTACTTTTACATGGGCTATGTGTTTACTATTGAGAAATCCTCATGAACTGGAAAAGGCAAAACAAGAACTTGATGAGAAAATTGGGAAAGAGAGATACATAAATGAATCAGATATGAATAAATTACCATATCTTCAAGCTATAGTCAAAGAAACATTAAGATTATATCCCGCAGCACCTCTAGCAGCACCTCATGAACTCACAGAAAATTGCACTTTAGGTGGATACAATATCAAAAAGGGAACTTGGCTAATTACAAATATATGGAAAATCAATACCGACCCTTCTGTTTGGTCAGATCACTTAGAATTTAGGCCAGAGAAATTCCTTACAACCCACAAAGATATCGATGTTAGAGGCCATCATTTTGAATTGTTACCATTTGGAGGTGGTAGACGTATTTGTCCTGGAATTTCCTTTGGCCTTCAAATGCTTCACTTTGTCTTGGCTAGTTTTTTGCATTCGTTTGAAATACAGAGTGCTCCAATTGTTGATATGAGTGCAACTCTTGGATTGGTCATTGCTAAAACTACTCCACTTAAGATTATGGTTAAACCACGTTTATCTCCCAGTTGCTATGTAACCATGTAA 624 0.367 TMIIGGNDTTTVTFTWAMCLLLRNPHELEKAKQELDEKIGKERYINESDMNKLPYLQAIVKETLRLYPAAPLAAPHELTENCTLGGYNIKKGTWLITNIWKINTDPSVWSDHLEFRPEKFLTTHKDIDVRGHHFELLPFGGGRRICPGISFGLQMLHFVLASFLHSFEIQSAPIVDMSATLGLVIAKTTPLKIMVKPRLSPSCYVTM 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc245269g00001 207 PRINTS E-class P450 group I signature 98 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PRINTS E-class P450 group I signature 146 169 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PRINTS E-class P450 group I signature 14 40 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PRINTS E-class P450 group I signature 57 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PRINTS E-class P450 group I signature 136 146 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 Gene3D Cytochrome P450 1 203 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PRINTS P450 superfamily signature 5 22 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PRINTS P450 superfamily signature 58 69 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PRINTS P450 superfamily signature 137 146 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PRINTS P450 superfamily signature 146 157 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 139 148 IPR017972 GO:0005506|GO:0016705
Stsc245269g00001 207 Pfam Cytochrome P450 1 187 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc245269g00001 207 PANTHER CYTOCHROME P450 82C3-RELATED 2 204 - -
Stsc245269g00001 207 SUPERFAMILY Cytochrome P450 1 198 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc245269g00001 Stsc-Chr245269 286 1169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc245269g00001 1 205 Cytochrome P450 AT4G31950 52.404 2.93e-73 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc245269g00001 - - gmx:100805047 302.367