Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc245262g00001 ATGTCTCAATTTCTGATTCCATCCAAACTCTTCTCTTCAATCAACAATCCATGGCGATGGCTTTCTTTGAGACTCTTCTCCTCAAGCATCTCAACCCGTTCTTCTTCTTCTTCAAGCTCCCAAGGCCGCTCTTTCACCGTCTCATACCTCGTTGGAACTTGCGGGTTCCCACCAGAACGTGCAGCTTCCGTTTCAAAACGCTTCAGCTTCGAAACAAGCGAAAAACCTGATTCGGTGATTGCGTTCTTCAGGAGCATTGGTTTTTCCCAATCCACAGCCTCCAGACTCCTCCAATACATGCCACAGTTACTCATAGCCAATCCCGAGAAATCTTTGCAGCCAAAAATCGATTTTTTCAAGTCCAAAGGGTTTTCCACCTCTGATATTTGCAAGGCCATTGTTTATTGCCCTTCGATCCTCGTCCGAAGCGTGCCGAATCAAATTGCTCCAACTTTCGATTTCTTCGATCACATGTTTCAGTCTAGGGACAAGCTCATCAAAGCTGTTATAGGCAATTCAGGTATTCTCTTTGGCTTTAAGGGATATGTAGAACCTAATATTGAGCTGCTTAGAGACGAAGGAGTTCCTATTGAACATGTTGTTAGGTTAATAGAGTACTACCCTCGCCAATTGAAGAAAACTCCTAAGAAGTATAAGGAGGTATTGCAGGATGTTAAGGAGATGAAGTTTGATCCCTCCAAGTTTCAATTTATTGTGGCTATTCATGTGTGTATAACCGCAGGAAAATCCGCCATGGCAAGAAGGGAAGGTATTTATAGAAGGTGGGGTTGGACGGATCGTGAGATTTTTGCAGCATTTAGAACCCATCCGTGGTGTCTTTCGATCTCGGACGGCAAGATTGAAGTGGTCATGGATTATCTCGTGAATGAATTGGGTTATGAGTCTTCTTCTATAGCTAGAATTCCGGCGGTGTTGTCCATGAGTTTGAAAAGGCGGATTATTCCGAGGGGTTCTGTTATGCTAGTTTTGCAGTCTAAGGGTCTGGTGAGTAAGCGGGGCTTGGCTACAATATTTAGGTGTGATGAAAAGACCTTCTTGAATAAGTTTATCTTCAGCCATCCGAACGAAGCTGAGGAGCTATTGAAGTTGTATCAAGCTAAATTGGGAAAAGAGTTAGACCATAAGAGAAATGAATGTAATACTTCATGA 1170 0.4316 MSQFLIPSKLFSSINNPWRWLSLRLFSSSISTRSSSSSSSQGRSFTVSYLVGTCGFPPERAASVSKRFSFETSEKPDSVIAFFRSIGFSQSTASRLLQYMPQLLIANPEKSLQPKIDFFKSKGFSTSDICKAIVYCPSILVRSVPNQIAPTFDFFDHMFQSRDKLIKAVIGNSGILFGFKGYVEPNIELLRDEGVPIEHVVRLIEYYPRQLKKTPKKYKEVLQDVKEMKFDPSKFQFIVAIHVCITAGKSAMARREGIYRRWGWTDREIFAAFRTHPWCLSISDGKIEVVMDYLVNELGYESSSIARIPAVLSMSLKRRIIPRGSVMLVLQSKGLVSKRGLATIFRCDEKTFLNKFIFSHPNEAEELLKLYQAKLGKELDHKRNECNTS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc245262g00001 389 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Stsc245262g00001 389 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Stsc245262g00001 389 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Stsc245262g00001 389 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Stsc245262g00001 389 SMART mt_12 201 231 IPR003690 GO:0003690|GO:0006355
Stsc245262g00001 389 FunFam Mitochondrial transcription termination factor-like 144 364 - -
Stsc245262g00001 389 PANTHER CGI-12 PROTEIN-RELATED 42 360 IPR003690 GO:0003690|GO:0006355
Stsc245262g00001 389 Gene3D Transcription termination factor 3, mitochondrial 58 180 IPR038538 -
Stsc245262g00001 389 Gene3D Transcription termination factor 3, mitochondrial 181 370 IPR038538 -
Stsc245262g00001 389 Pfam mTERF 81 231 IPR003690 GO:0003690|GO:0006355
Stsc245262g00001 389 Pfam mTERF 184 353 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc245262g00001 Stsc-Chr245262 1816 3479 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc245262g00001 mTERF 4.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc245262g00001 K15031 - qsa:O6P43_003531 320.857