Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc245247g00001 ATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATTCGGAGCTAACTGCGGCCCTGAGGCCGTTTGGTTCAAGACCGGAGCTCTTCTTCTCGATGGTGGAACGCTGAACTACTTTGGTAAGCCCATTCCCATCAACCTCATTGTTGCCGTCGTTGCAGAGGTTGTACTTTTGGGAGGTGCAGAGTACTACAGAATTATCAATGGCCTGGATTTGGAAGACAAGCTTCACCCAGGTGGTCCATTTGACCCGTTGGGACTCGCGAAGGATCCGGACCAAGCAGCATTGTTGAAGGTGAAGGAGATCAAGAATGGAAGGCTTGCCATGTTTGCCATGCTTGGTTTCTACTTCCAAGCTTATGTGACAGGAGAAGGCCCTGTTGAGAACCTTGCAAAGCATCTGAGTGACCCCTTTGGCAACAACTTGCTCACTGTCATTGCTGGTTCTGCTGAGAGGGTTCCAACTCTTTGA 480 0.5 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEVVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERVPTL 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc245247g00001 159 Gene3D Chlorophyll a/b binding protein domain 1 159 - -
Stsc245247g00001 159 FunFam Chlorophyll a-b binding protein, chloroplastic 1 159 - -
Stsc245247g00001 159 SUPERFAMILY Chlorophyll a-b binding protein 1 150 - -
Stsc245247g00001 159 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 157 IPR001344 GO:0009765|GO:0016020
Stsc245247g00001 159 Pfam Chlorophyll A-B binding protein 1 122 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc245247g00001 Stsc-Chr245247 85 975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc245247g00001 1 159 Chloroplast and Mitochondria Gene Families AT4G10340 91.195 2.65e-94 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc245247g00001 K08916 - gmx:100820327 313.538