Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc245068g00002 ATGGTGTATGAAGATATTATTGAGGCCACTCAAGATTTTGACAACAAATATCTCATTGGAGTTGGAGGCTTTGGATCTGTTTACAAAGCTAAGATGTCCTCTGGTCAAGTTGTTGCTGCGAAGAAGCTCCACTCAACACCAAATGATGAAGAAATGCCCAATCTCAAAACTTTCCACAGAGAGATTCAAGTCTTGACTGAGATCCGTCATCGCAACATTGTGAAGTTGTACGGGTTCTGTTCTCATTCTCGGTGCTGCTTCTTGGTTTATGAGATTATAGAAAGGGGAAGCGTTCATAAGATTCTGGCCAATGATGAAGAAGCGGTTGAGTTCAATTGGAAAAGGAGGGTGAATGTTGTTAAAGACGTAGCTAATGCTTTATGCTACATGCACCATGATTGTTCACCTCCTATAGTGCACAGAGATATATCAGCAAAGAATGTTCTTCTTGATTTGGAATATGAGGCTCATGTATCAGATTTCGGAACATCCAAACTTCTCAATCCAGATTCATCAAATTGGACCTCATTTGCAGGGACCTTTGATTATGCAGCTCATGAACTTGCATACACAATGGAAGTGAATGAAAAGTGTGATGTGTATAGCTTTGGGATATTAGCTTTGGAAATACTTTTAGGCAAGCATCCTGGAGATGCTGCATCATCATCATGTATGACAATGGGACATGCATCAACACTTGATGATAATAATTCGCTCGTGAAGGATAAGTTGGATCATCGTCTTTCTTTCCCTACAAATCCAACAACAGTAGAGCTTGTTCGTTCGGATAGCAACTGTTGGGCATCGCCACCATACCCGTAG 822 0.4088 MVYEDIIEATQDFDNKYLIGVGGFGSVYKAKMSSGQVVAAKKLHSTPNDEEMPNLKTFHREIQVLTEIRHRNIVKLYGFCSHSRCCFLVYEIIERGSVHKILANDEEAVEFNWKRRVNVVKDVANALCYMHHDCSPPIVHRDISAKNVLLDLEYEAHVSDFGTSKLLNPDSSNWTSFAGTFDYAAHELAYTMEVNEKCDVYSFGILALEILLGKHPGDAASSSCMTMGHASTLDDNNSLVKDKLDHRLSFPTNPTTVELVRSDSNCWASPPYP 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc245068g00002 273 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Stsc245068g00002 273 FunFam Leucine-rich repeat receptor protein kinase MSP1 1 92 - -
Stsc245068g00002 273 Gene3D Transferase(Phosphotransferase) domain 1 93 271 - -
Stsc245068g00002 273 Pfam Protein kinase domain 15 222 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc245068g00002 273 PANTHER LEUCINE RICH REPEAT KINASE 2 1 267 - -
Stsc245068g00002 273 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Stsc245068g00002 273 ProSiteProfiles Protein kinase domain profile. 13 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc245068g00002 273 SUPERFAMILY Protein kinase-like (PK-like) 3 223 IPR011009 -
Stsc245068g00002 273 ProSitePatterns Tyrosine protein kinases specific active-site signature. 138 150 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc245068g00002 Stsc-Chr245068 1870 2812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc245068g00002 3 185 Receptor kinase-like Gene Family AT4G08850 60.215 6.32e-70 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc245068g00002 Pkinase 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc245068g00002 - - lang:109325563 364.385