LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc244g00002	ATGGCGCCGAAGCAGAGAGAAGCCAGGAAGGTTAGCAGGAACCCTGAGCTGGTTCGTGGAATCGGGAAGTACTCTCGCTCAAAGATGTACCACAAGAGGGGCTTGTGGGCCATCAAGGCCAAGAACGGCGGCAAGCTCCCCCTCCACGAGCCCAAGCCCAAGCCCCAGGCCCCCGCTCAGAAGCCCCCTAAGTTCTACCCTGCTGAAGATGTCAAGACTCCCCTTGTCAACAAGCACAAACCTAAACCCACCAAGCTCAGGGCTAGCATTACTCCTGGGACAGTGCTGATTCTTCTTGCTGGAAGATTCAAGGGAAAGAGAGTTGTGTTCCTCAAGCAGCTTCCATCTGGGCTTCTTCTTGTATCTGGACCTTTCAAGATTAATGGAGTTCCTTTGAGACGCGTGAATCAGTCATATGTTATTGCCACCTCAACCAAAGTAGATGTATCTGCTTGTAATGTGGAGAAATTCGATGACAAATACTTCTCAAAGGAAGTCCAGAAAAAGAAGAAGAAGGGAGAAGGGGAGTTCTTTGAGGCCGAGAAAGAGGAGAAGAAGACCCTTCCCCAAGACAAGAAAGATGACCAGAAGACCGTTGATGCTGCTTTGATAAAAGCCATCGAGAGCGTTCTGGACTTGAAGTCTTACCTTGGTGCTAGGTTTTCATTGAAGCAGGGCCAGAAGCCCCATGAATTAGTTTTCTAG	705	0.495	MAPKQREARKVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGKLPLHEPKPKPQAPAQKPPKFYPAEDVKTPLVNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIATSTKVDVSACNVEKFDDKYFSKEVQKKKKKGEGEFFEAEKEEKKTLPQDKKDDQKTVDAALIKAIESVLDLKSYLGARFSLKQGQKPHELVF	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc244g00002	234	PANTHER	60S RIBOSOMAL PROTEIN L6	8	234	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Stsc244g00002	234	Pfam	Ribosomal protein L6, N-terminal domain	3	62	IPR005568	GO:0003735\|GO:0005840\|GO:0006412
	Stsc244g00002	234	MobiDBLite	consensus disorder prediction	1	16	-	-
	Stsc244g00002	234	MobiDBLite	consensus disorder prediction	1	23	-	-
	Stsc244g00002	234	SUPERFAMILY	Translation proteins SH3-like domain	88	178	IPR008991	-
	Stsc244g00002	234	MobiDBLite	consensus disorder prediction	41	68	-	-
	Stsc244g00002	234	Pfam	Ribosomal protein L6e	127	234	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Stsc244g00002	234	FunFam	60S ribosomal protein L6	88	172	-	-
	Stsc244g00002	234	CDD	KOW_RPL6	82	234	IPR041997	-
	Stsc244g00002	234	ProSitePatterns	Ribosomal protein L6e signature.	128	146	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Stsc244g00002	234	Gene3D	-	88	172	IPR014722	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc244g00002	Stsc-Chr244	23092	25484	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc244g00002	1	234	Cytoplasmic Ribosomal Protein Gene Family	AT1G74060	78.205	1.29e-115	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc244g00002	K02934		-	fve:101312282	372.859