Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244767g00001 ATGCGCCACAGAAACCTTGTGTCCCTCTATGGCTGCACCTCACGCCACAGTCGCGAATTATTACTTGTGTATGAGTATGTTTCAAATGGAACTGTTGCTGCTCATCTCCATGGTGATTTGTCAAAGAGTGAAACACTTCCGTGGCACATAAGAATGAAAATTGCCATTGAGACTGCAAGTTCATTGTCTTATCTCCATGCCTCTGACATCATTCACCGTGATGTGAAAACCAATAACATTCTCCTAGACCATGATTTTTGTGTTAAGGTTGCGGATTTCGGGCTTTCAAGACTATTTCCCAATGATGTAACCCATGTGTCCACAGCACCACAAGGGACACCAGGCTATGTTGATCCTGAATATCACCGCTGCTACCATCTTACGAACAAGAGTGATGTTTATAGTTTCGGAGTGGTGCTTATTGAGCTTATATCTTCTAAGCCTGCTGTTGATATGGACAGGCATAAGGATGAGATTAACTTGTCTGATTTGGCCATTAACAAGATTCAGAACAATGAGTTTAGCGAGCTGGTAGATCCTTCTCTTGGTTTTGATTGGGATAGTGAGGTAAAGAGGATGACAGTTTCCGTGGCCGAATTGGCTTTTCAGTGTTTGCAACGGGATAGGGAATTGAGACCTTCCATGGATGAGGTTTTGAGGGCGCTGATCATTATTGAAAGTGGGAAGATTAAGGATGAAGATGCAGAGGTAGAGGAAGTAGATGTACATAAACCACCATCTGTATCATCTCCACCTTCCCCGGATTCGGATATTGAAGAGCAGGATGCTACTGGCTTCACATCAAGCAGTGACAGGTTCAAGATAACAGAGTCTTAG 837 0.4349 MRHRNLVSLYGCTSRHSRELLLVYEYVSNGTVAAHLHGDLSKSETLPWHIRMKIAIETASSLSYLHASDIIHRDVKTNNILLDHDFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHRCYHLTNKSDVYSFGVVLIELISSKPAVDMDRHKDEINLSDLAINKIQNNEFSELVDPSLGFDWDSEVKRMTVSVAELAFQCLQRDRELRPSMDEVLRALIIIESGKIKDEDAEVEEVDVHKPPSVSSPPSPDSDIEEQDATGFTSSSDRFKITES 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244767g00001 278 FunFam Wall-associated receptor kinase-like 20 27 235 - -
Stsc244767g00001 278 SUPERFAMILY Protein kinase-like (PK-like) 1 224 IPR011009 -
Stsc244767g00001 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 70 82 IPR008271 GO:0004672|GO:0006468
Stsc244767g00001 278 Pfam Protein kinase domain 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244767g00001 278 ProSiteProfiles Protein kinase domain profile. 1 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244767g00001 278 MobiDBLite consensus disorder prediction 253 278 - -
Stsc244767g00001 278 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 262 IPR044652 GO:0004672
Stsc244767g00001 278 SMART serkin_6 2 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244767g00001 278 PIRSF ILK 1 237 - -
Stsc244767g00001 278 MobiDBLite consensus disorder prediction 234 278 - -
Stsc244767g00001 278 Gene3D Transferase(Phosphotransferase) domain 1 1 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244767g00001 Stsc-Chr244767 3148 4521 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244767g00001 1 255 Receptor kinase-like Gene Family AT1G25390 64.453 3.36e-112 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc244767g00001 Pkinase 3.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244767g00001 - - adu:107467171 434.106