Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244669g00001 ATGCGGTGGTTACCGTCCAATATATTCACCCATTCCCATTCCCATCCTCCTCATCATCATTCTCATTCTCATTCTTCAGCTTCTTCTTCTCCTCATTCTAACTCTCCGCCCAATGTTCCACCGCCTTCATTGTCGCCCCCTCCATCCACTACCCGCACGCTAAAGACATGCGCATCCTCTTCCTCCCTAACGGACTTTTTCCACCCGAGAAAGAAACCTTCTCAGGAATCCACGCCAGCCGCCTGGATCTTCGGAACCGCCGGGAAAAAGTCCTCCTCCAAGCACCTCAAAACATCACACCACGCCGATGACCTAGATGATGACTCCGACGCCGTTGTTCCCATGGCTCGCTCCGATCGCACCTATACACGCTCCTACACTATATGTTCCCCTCCCTCCGCCGCCTTTGTTGCTCCTCAGCCCTTGCCTATGCCGCAGGGGCTCTCCTTCCACGCCGGAATCCGCCATACCACCGTTGTTGACCGGCCTCTTCCATCCCCAAAGAAGGACCACGCCAGTAAGCAATCTTTCTTCTCAGTATCCTCCAGAGGCTTAGACGAACTCAAACTCGACGCCCTCGTCGTCGATCCTGTCCCCAACGCCTATCCTCGCATGCGGAGTGTATTTGCGAGCACAAAAAAGAACAATGATGCGATGGAAAGAAGAGTGCCAGGTTTAGGGCCTCAAGAAAGCGGTGGTTATGGAGGAGGAGATAACAACAGCCTGAGGATGAGCTTGTCAACGTCAAGAAGTGCTCCATGTAGCCCGTTTGAAAGCCCAGCATTAAGCCCACAGAACAAGAGAAGCGATGACTTTGTGCCGTACCATTACACGCCACCAAAACAGATGAACCATTTCTGGTCTGCACCAGATATCATGGCTACATCATCATCTTCTGATCACTTCGGAGGAGGTGGATTCTTTGATTTCTCTCCAATGGGGGGGATTGATGCTACTACTAGCAATAATTCTCCACACCACAGTCCAACGGGAATCTTGACCCCACGCCATGGCAACTCCAGAAGCCCAACAAGGCCTTCTTCACCCATACAGGGGGGGAGCAGGTTGTCCCTTGACAACTTCAAACCACAAGCTCGCCGTGATGTGATTCTTGGTCCTATCAACAACAATGTTCATCCCTTACCCTTGCCTCCTCCCTCCTCGGCCTTGACTTCACCAACTGCTGCTTATGCACAGTCCCAAGGTGGCAGAAATAATGAATCCTGCTCAATGCAAAGCCAATGGCAAAAGGGAAAGCTCATTGGTCGAGGTACTTTTGGAAGCGTCTATGTCGCTACCAATAGAGAAACTGGAGCATTGTGCGCAATGAAAGAAGTAGAAATATTTGCTGATGATCCAAAATCTAAAGAGTGTATAAAACAGTTAGAGCAGGTTGGAGACAAGTTTTACATTTATCTGGAATATGTCCATCCGGGTTCAATAAACAAATACGTACGGGAACATTGTGGTGCAGTCACGGAATCTGTTGTTAGGAATTTCACTCGCCACATTCTTTCAGGGCTAGCTTACTTGCATAGCACGAAAACAATTCATAGAGACATCAAAGGGGCTAACTTGTTAGTTGATTCTACTGGAGTTGTCAAGCTAGCTGACTTTGGGATGTCTAAACATGTAAGTAGTGAAGAAATTTATAAATTTATTTCATAA 1668 0.4856 MRWLPSNIFTHSHSHPPHHHSHSHSSASSSPHSNSPPNVPPPSLSPPPSTTRTLKTCASSSSLTDFFHPRKKPSQESTPAAWIFGTAGKKSSSKHLKTSHHADDLDDDSDAVVPMARSDRTYTRSYTICSPPSAAFVAPQPLPMPQGLSFHAGIRHTTVVDRPLPSPKKDHASKQSFFSVSSRGLDELKLDALVVDPVPNAYPRMRSVFASTKKNNDAMERRVPGLGPQESGGYGGGDNNSLRMSLSTSRSAPCSPFESPALSPQNKRSDDFVPYHYTPPKQMNHFWSAPDIMATSSSSDHFGGGGFFDFSPMGGIDATTSNNSPHHSPTGILTPRHGNSRSPTRPSSPIQGGSRLSLDNFKPQARRDVILGPINNNVHPLPLPPPSSALTSPTAAYAQSQGGRNNESCSMQSQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEIFADDPKSKECIKQLEQVGDKFYIYLEYVHPGSINKYVREHCGAVTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSTGVVKLADFGMSKHVSSEEIYKFIS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244669g00001 555 MobiDBLite consensus disorder prediction 49 68 - -
Stsc244669g00001 555 SMART serkin_6 415 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244669g00001 555 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Stsc244669g00001 555 MobiDBLite consensus disorder prediction 88 107 - -
Stsc244669g00001 555 Pfam Protein kinase domain 416 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244669g00001 555 MobiDBLite consensus disorder prediction 318 358 - -
Stsc244669g00001 555 MobiDBLite consensus disorder prediction 34 48 - -
Stsc244669g00001 555 MobiDBLite consensus disorder prediction 1 79 - -
Stsc244669g00001 555 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 25 547 - -
Stsc244669g00001 555 ProSiteProfiles Protein kinase domain profile. 415 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244669g00001 555 MobiDBLite consensus disorder prediction 213 271 - -
Stsc244669g00001 555 SUPERFAMILY Protein kinase-like (PK-like) 410 548 IPR011009 -
Stsc244669g00001 555 MobiDBLite consensus disorder prediction 234 266 - -
Stsc244669g00001 555 Gene3D Transferase(Phosphotransferase) domain 1 398 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244669g00001 Stsc-Chr244669 1496 3778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244669g00001 251 549 MAP Kinase Kinase Kinase AT5G66850 51.488 3.88e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc244669g00001 Pkinase 2.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244669g00001 - - psat:127120353 370.163