Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244546g00001 CTTAAAGGTTGGATCCTGAAGATGGGACTAGGATTGGTTGCTTCAGTTCTTCTAGTGCTAGTAGTAATGGTCACACTCTACTACACAAGATGGAAGCAGAAAAATCCTAAACAGACGCTGGGGATTAATTCCTTTTTGGAGAAACACGGGCCCCTTCAAATTAAGAGATATACTTATTCAGAGATGAAGAAGGTGACCAACTCCTTCAGAGACAAACTAGGCCAAGGAGGATTTGGCAGTGTATACAAGGGACAATTGCAGGATGGACGCCATGTTGCAGTGAAGATCCTAAGTGAACTGAAAGGTGATGGTGACGATTTCATCAATGAGGTTGCTAGTATGAGCAGAACTTCTCATGTTAACATTCTTGCTCTTCTTGGCTTTTGCTTTCAAGGTTCCAAACGAGCTTTGGTTTATGAATTTATGCCCAATGGCTCGCTTGAGAAATTAATCTATGAAGATAATGCTGTGATAGGGGATCGCCAATTGGATTGTCAAACTTTATATGATATTGCAATTGGTGTTGCCAGAGGACTTGAATATTTGCACAAGGGCTGTAATACTAGAATCTTGCATTTTGACATAAAGCCTCATAACATTCTGTTGGATGAAAATTTCGGTCCCAAAATTTCAGACTTTGGACTTGCAAAAGTTTGCACAAGAAAAGAAAGTATGGTATCGATATTTGGTGCCAGAGGAACTGCAGGCTATATTGCCCCCGAGGTATTTTCTAGGAATTTTGGTGCAGTATCTCACAAGTCAGATGTTTATAGTTATGGAATGGTGGTGTTAGAAATGGTTGGGCGAAGAAGGAATCTCATAGTTGAAGTTGATGCATCGAGTGAGATATATTTCCCTCATTGGATATACAATCGCCTTGTGTCGAATCAAGAACTTGGTTTGCAAAGTATAAGAAATGAGTATGAAAATGAGAAGGTAAGAAAGATGACAATAGTAAGTTTATGGTGCATTCAAACCAACCCTTCAACTCGACCATCAATTAGTAAGGTGGTGGAAATGTTGGAAGGAAGAGCAGAGTTGTTGCAATTGCCTCCTAAACCATATTGGTTTTCCCCTTTAACTTCTCCCTGA 1092 0.3993 LKGWILKMGLGLVASVLLVLVVMVTLYYTRWKQKNPKQTLGINSFLEKHGPLQIKRYTYSEMKKVTNSFRDKLGQGGFGSVYKGQLQDGRHVAVKILSELKGDGDDFINEVASMSRTSHVNILALLGFCFQGSKRALVYEFMPNGSLEKLIYEDNAVIGDRQLDCQTLYDIAIGVARGLEYLHKGCNTRILHFDIKPHNILLDENFGPKISDFGLAKVCTRKESMVSIFGARGTAGYIAPEVFSRNFGAVSHKSDVYSYGMVVLEMVGRRRNLIVEVDASSEIYFPHWIYNRLVSNQELGLQSIRNEYENEKVRKMTIVSLWCIQTNPSTRPSISKVVEMLEGRAELLQLPPKPYWFSPLTSP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244546g00001 363 SMART serkin_6 67 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244546g00001 363 FunFam serine/threonine-protein kinase PBS1-like 38 141 - -
Stsc244546g00001 363 ProSitePatterns Protein kinases ATP-binding region signature. 73 95 IPR017441 GO:0005524
Stsc244546g00001 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Stsc244546g00001 363 ProSiteProfiles Protein kinase domain profile. 67 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244546g00001 363 Gene3D Phosphorylase Kinase; domain 1 45 141 - -
Stsc244546g00001 363 Gene3D Transferase(Phosphotransferase) domain 1 142 349 - -
Stsc244546g00001 363 Pfam Protein kinase domain 71 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244546g00001 363 PANTHER RUST RESISTANCE KINASE LR10-RELATED 42 354 IPR045874 GO:0004672
Stsc244546g00001 363 FunFam PR5-like receptor kinase 142 353 - -
Stsc244546g00001 363 SUPERFAMILY Protein kinase-like (PK-like) 49 342 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244546g00001 Stsc-Chr244546 393 1588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244546g00001 6 354 Receptor kinase-like Gene Family AT4G18250 53.782 4.01e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc244546g00001 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244546g00001 - - ahf:112712060 618.231