Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244440g00002 ATGCATCTTCCACTTCTTGCTTGGATGAACTCCTTAAGATCATTGAGTGCAAGGACTCTTAAGGGTCAGCTGGTTTTGCCAGTCTTTTATGGAGTGAATCCATCTCAAGTAAGAGAACAGAAGGGAAGTTTTGCAGAAGATTTTGCCAAACATGAAGATAAGTTCAGGGATGATGTCAACAAAGTAAAAGGGTGGAGGGCAGCACTATGTGAAGCTTCTACTTTGTCTGGATGGCACATGGGTAGTGACGGGCAAGAATCAAAATTTGTCCAAAGAATTGTTGAAGAGATATTGAGTAAGTTGAACCGCACGCCTTTCAATGTTGCTAAGCATCCTGTTGGACTGGATTCACCTATTGAAGATATCAAAACACTTTTAGATACTGGATCAGATGATGTAAAGGCTATAGGAATTTATGGAATTGGTGGAATAGGAAAAACAACACTTGCTAAGGCTGTTTATAACCATATTGCTAACCAGTTTGAGGGTAGTGCATTCATTGCAAATGTCAGAGAAATTTCAAGTCAAAGATCTGGCTTAGTTCAACTACAAGAATCTCTTCTTTCTGAGATTTTGAACCAGAGAGATTGTAAAGTAGGAAACAAAGACAGAGGCATTAATATGATAAAGAATAGGCTTTGCAGCAAAAAAGTTCTCATAGTTGTTGATGATGCTGATTCGTTGGAGCAACTGGAATCATTGGTTGGAGAATACAGTTGGTTTGGTTCTGGAAGTAGAATCATCATAACAACTAGAGATGAGCATTTGCTAATTGCTCACAATGTGGAAACAATCTTCAAGGTCAAGGAATTAAGTCAGGGTAATGCTCTTGAACTGTTTAGTTGGTATGCATTTAAAAATCCTTGTCCCCCAACAAATTATGACAATTTGTCATCCCACATATTAAACTATGCCAAGGGTCTGCCAGTGGCACTAACAGTTTTGGGATCTCACCTGTGTGGAAGGGGAAAAGCCGAGTGGATAAGTGCATTAGCTAAACTGAAAAAAGTTCCAAATAAACAGATTTTTGAAATACTCAAAACCAGCTTTGATGGGTTGGAGGAGAATGAAAAGGCCATTTTTCTCGATATAGCATGTTTCTTTAAGGGAGAGGACAGACATTATGTGAAAATGATATTAGATGGTTGTGACCTACACTCGGATAATGGTTTCGCAGTTCTAATGGAGAAGTCTCTAATTGTGGTAGAAGTTAATAGGATTTGGATGCATGATTTACTACAGGAAATGGCTAAAGAAATTGTGCGTCGTGAATCCCCCAATGATCCTGGTAAACGAAGCAGGTTATGGTTTCATGAGGATGCTCTTCATGTATTAAAACACAATAAG 1347 0.386 MHLPLLAWMNSLRSLSARTLKGQLVLPVFYGVNPSQVREQKGSFAEDFAKHEDKFRDDVNKVKGWRAALCEASTLSGWHMGSDGQESKFVQRIVEEILSKLNRTPFNVAKHPVGLDSPIEDIKTLLDTGSDDVKAIGIYGIGGIGKTTLAKAVYNHIANQFEGSAFIANVREISSQRSGLVQLQESLLSEILNQRDCKVGNKDRGINMIKNRLCSKKVLIVVDDADSLEQLESLVGEYSWFGSGSRIIITTRDEHLLIAHNVETIFKVKELSQGNALELFSWYAFKNPCPPTNYDNLSSHILNYAKGLPVALTVLGSHLCGRGKAEWISALAKLKKVPNKQIFEILKTSFDGLEENEKAIFLDIACFFKGEDRHYVKMILDGCDLHSDNGFAVLMEKSLIVVEVNRIWMHDLLQEMAKEIVRRESPNDPGKRSRLWFHEDALHVLKHNK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244440g00002 449 Pfam NB-ARC domain 118 340 IPR002182 GO:0043531
Stsc244440g00002 449 Gene3D - 89 265 IPR027417 -
Stsc244440g00002 449 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 445 IPR044974 GO:0006952
Stsc244440g00002 449 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 78 IPR035897 -
Stsc244440g00002 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 364 IPR027417 -
Stsc244440g00002 449 PRINTS Disease resistance protein signature 212 226 - -
Stsc244440g00002 449 PRINTS Disease resistance protein signature 305 319 - -
Stsc244440g00002 449 PRINTS Disease resistance protein signature 135 150 - -
Stsc244440g00002 449 SMART AAA_5 132 275 IPR003593 GO:0016887
Stsc244440g00002 449 Gene3D - 8 72 IPR035897 -
Stsc244440g00002 449 Pfam TIR domain 20 105 IPR000157 GO:0007165
Stsc244440g00002 449 SUPERFAMILY "Winged helix" DNA-binding domain 341 446 IPR036390 -
Stsc244440g00002 449 Gene3D - 270 354 IPR042197 -
Stsc244440g00002 449 ProSiteProfiles TIR domain profile. 1 101 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244440g00002 Stsc-Chr244440 3442 5499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244440g00002 113 436 WRKY Transcription Factor Family AT5G45050 35.692 2.11e-62 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244440g00002 - - adu:107489828 801.586