LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc244437g00001	ATGAACAGGGGAATTGAAGTTCTGTCTCCAGCTTCTTATTTGCACAACTCAAATTGGTTGTTCCAAGAGAGTGGAGGAACAAAATGGACAGCACAAGAGAACAAGCAATTCGAGAACGCTTTGGCGCTGTTCGACAAGGAGACGCCGGACCGGTGGCTGAGGGTGGCGGCTATGATCCCGGGGAAGACGGTTGGTGATGTGATCAAACAGTACAGGGAGTTAGTTGAAGATGTGAATGTGATTGAATCTGGTTTCATACCAATTCCATCAGGGGGAAGTGGTGATGATGGTTCTTCTTTCACATTGGAGTGGGTTGACAATCATGAATTTGATGCGTTTAAGCAATTCTATGGTGTTGGTTGCAAAAGGGGTTCTTCCACTAGACCTTCTGATCAAGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAAGAACACAGACTATTTTTGATGGGTTTGAAGAAGTACGGTAAAGGTGACTGGAGAAACATATCTCGAAATTTTGTTACCACAAGAACCCCTACTCAAGTTGCGAGTCATGCTCAGAAATACTTTATCCGGCAACTCAACGGCGGAAAGGATAAACGGAGATCAAGTATCCATGATATCACAATGGTTAATCTCCCCGAAACAAAATCGCTTTCTTCATCGGAAAGTAACAAACCTTCAGCCTCCCCAGATCAGAATGCAAATTTAAATCAGAATCAGAAACTGGCAACCATGGTTAAACAGGAATATGACTGGAAATCATTGCCATATGAGGGTGTGCCTTTGGTGCTTGATTCAATAGATGGAAATTCGTTCATGACACCCTTGTGTGGTGCTTCTTCTTATGGATCTAAATCTCAGGAGCAGTATTTACGTAGAGGAACTTTTCATGGATTCCAATTTGGAGCTTATGATACTTTTATGCAAATGCAGTCAATGAAACCTCAGTGA	936	0.4274	MNRGIEVLSPASYLHNSNWLFQESGGTKWTAQENKQFENALALFDKETPDRWLRVAAMIPGKTVGDVIKQYRELVEDVNVIESGFIPIPSGGSGDDGSSFTLEWVDNHEFDAFKQFYGVGCKRGSSTRPSDQERKKGVPWTEEEHRLFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLNGGKDKRRSSIHDITMVNLPETKSLSSSESNKPSASPDQNANLNQNQKLATMVKQEYDWKSLPYEGVPLVLDSIDGNSFMTPLCGASSYGSKSQEQYLRRGTFHGFQFGAYDTFMQMQSMKPQ	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc244437g00001	311	MobiDBLite	consensus disorder prediction	206	232	-	-
	Stsc244437g00001	311	ProSiteProfiles	Myb-like domain profile.	132	184	IPR001005	-
	Stsc244437g00001	311	SUPERFAMILY	Homeodomain-like	27	83	IPR009057	-
	Stsc244437g00001	311	Gene3D	-	138	188	-	-
	Stsc244437g00001	311	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	135	187	IPR006447	GO:0003677
	Stsc244437g00001	311	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	23	235	IPR043363	-
	Stsc244437g00001	311	ProSiteProfiles	SANT domain profile.	24	79	IPR017884	-
	Stsc244437g00001	311	FunFam	Transcription factor SRM1	21	88	-	-
	Stsc244437g00001	311	SUPERFAMILY	Homeodomain-like	134	187	IPR009057	-
	Stsc244437g00001	311	CDD	SANT	139	184	IPR001005	-
	Stsc244437g00001	311	SMART	sant	25	77	IPR001005	-
	Stsc244437g00001	311	SMART	sant	136	186	IPR001005	-
	Stsc244437g00001	311	FunFam	transcription factor MYB1R1	138	189	-	-
	Stsc244437g00001	311	Gene3D	-	22	88	-	-
	Stsc244437g00001	311	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	132	188	IPR017930	-
	Stsc244437g00001	311	ProSiteProfiles	SANT domain profile.	140	188	IPR017884	-
	Stsc244437g00001	311	CDD	SANT	28	75	IPR001005	-
	Stsc244437g00001	311	Pfam	Myb-like DNA-binding domain	139	184	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc244437g00001	Stsc-Chr244437	279	2004	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Stsc244437g00001		Myb_DNA-binding	2.3e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc244437g00001	-		-	qsa:O6P43_026398	432.95