Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244374g00004 ATATATACTGATTCTGCAGAAGCCAAGATTCCTGCTGTTCTTGAATATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCGCACCATCAGCCAATGCTAGAGGCGATACACGAGTTCCTTCTCAAGAAAAAAGTGGGTTGCATCAGGATTGATGGAGGTACACCCGCCGCATCAAGGCAACAATTGGGTACAGATTTCCAGGAAAAGGATTTTATCAAGGCAGCTGTGCTATCCATTAAGGCTGGAGGAGTTGGATTGACTTTAACTGCTGCAAGCACAGTTATCTTTGCAGAACTATCCTGGGCTCCAGGTGACCTAATTCAAGCCGAAGATCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTGGCAAATGATACGGTTGACGACATCATATGGGATGTGGTGCAATTCAAACTGGATAATTTGGGGCAGATGTTAGATGGCCATGAGAACACCTTAGCTGTGTCAAATAATCGGCCATTGAGTAGCCCTGCAAAGCATAATACTATCGAGCATAACCCTTCAAAGCAGAAAACTCTTGACCAGTTTGTTAGAAGATGTGATAAAGTGGATAGGTCAGAACACCAGCCTGACCCGAAACGACCCCGCCAATCATGA 648 0.4429 IYTDSAEAKIPAVLEYLGTVIEAGCKFLIFAHHQPMLEAIHEFLLKKKVGCIRIDGGTPAASRQQLGTDFQEKDFIKAAVLSIKAGGVGLTLTAASTVIFAELSWAPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQFKLDNLGQMLDGHENTLAVSNNRPLSSPAKHNTIEHNPSKQKTLDQFVRRCDKVDRSEHQPDPKRPRQS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244374g00004 215 MobiDBLite consensus disorder prediction 168 188 - -
Stsc244374g00004 215 Gene3D - 3 205 IPR027417 -
Stsc244374g00004 215 MobiDBLite consensus disorder prediction 196 215 - -
Stsc244374g00004 215 Pfam Helicase conserved C-terminal domain 12 121 IPR001650 -
Stsc244374g00004 215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 13 164 IPR001650 -
Stsc244374g00004 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 171 IPR027417 -
Stsc244374g00004 215 CDD SF2_C_SNF 8 132 - -
Stsc244374g00004 215 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 1 207 - -
Stsc244374g00004 215 SMART helicmild6 38 121 IPR001650 -
Stsc244374g00004 215 FunFam Chromatin remodeling factor18 1 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244374g00004 Stsc-Chr244374 4270 6280 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244374g00004 11 161 RAD5 or RAD16-like Gene Family AT1G11100 33.113 2.07e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244374g00004 K14440 - gmx:100778246 363.999