Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244312g00001 ATGGCTTCAATGTTCTGCAACTTACATACTTTTCTTAACCTATTATTCCCATCCTTCCTTATTGTTATTCTCAAAACTTACTCAGTCGAATTCCAAATATCAAGGTTTACGCCTGGCGATCCAAACATACTTTACAGAGGACAAGCTATTCCTCGGGTTGGAACAATTGAACTGAACAATAACATAGATTACTTATTCCAAGTCGGATCAGCCATATACTCCAAAGATGTTCCAATTTGGGAACCAAGATCAGGAAAACAAGCTGATTTCACAACTCACTTCACCTTTGTCATTGATACTCAAGGAAGATCTCAGTATGCTGCCGGGCTTGCCTTCTTCCTTGCACCTTCTGGATTCCAAAACCCACTAAACTCGGCCGGCGGCTTCTTTGGCCTATATAACACAACCACCAGTGACTCCTCCCGGAACCAGATTGTTCATGTAGAGTTTGATTCTTTCTCCAATCCAGAATGGGATCCCAAAATGGAGCACGTTGGCATCAACGTCAATTCAATTTCTTCAGCAAACTACACAACTTGGAATGCTAGCAGGCATAGTAATGACATTGCTGATGCATGGATTTCATACAATTCAACAAACAAGTTTCTAAGTGTGTCATGGAAATACCAAACAACCTCTACATCTCAGTCTCAAGAGAATACTACCCTTTCTCATCAAATTGATTTGTTCAAAGTCTTGCCTCAATCGGTGACAATTGGATTTTCCGCGGCTACTAGTAAGTACACAGAACGACATGTTATTCTATCTTGGGAATTCACCTCTACTTTGGATGCAGAGCCTAGTAACGGAAACAATTCAAAGAAGACATGGAAGACGGTGGTCGCGTCAGTTGCAGGAGCTCTAATTTTGATAGTGGCGGCTATCATAGCGTATGTAATCATTAGAAGATGGAAGCAAAAGAAAAAAGAAGAGAGGATGAGATCTTTTGATGATTTTGAAAGACAAGCTGGACCAAGAAGATTCTCTTATGAAGATATTGTCTTTGCTACCAATAACTTCTCTGCAAACAGGAAGCTCGGTCAAGGTGGATTTGGGGCGGTGTATAGAGGCTACTTTGCCGACTTGGATTTGGTTGTTGCTGTCAAGAAGATATTAAGCGGATCAAGACAAGGCAAAAGAGAGTACATAACTGAAGTCAAAGTCATCAGCAGGCTAAGGCATAGGAATCTTGTGCAGCTCATAG 1204 0.412 MASMFCNLHTFLNLLFPSFLIVILKTYSVEFQISRFTPGDPNILYRGQAIPRVGTIELNNNIDYLFQVGSAIYSKDVPIWEPRSGKQADFTTHFTFVIDTQGRSQYAAGLAFFLAPSGFQNPLNSAGGFFGLYNTTTSDSSRNQIVHVEFDSFSNPEWDPKMEHVGINVNSISSANYTTWNASRHSNDIADAWISYNSTNKFLSVSWKYQTTSTSQSQENTTLSHQIDLFKVLPQSVTIGFSAATSKYTERHVILSWEFTSTLDAEPSNGNNSKKTWKTVVASVAGALILIVAAIIAYVIIRRWKQKKKEERMRSFDDFERQAGPRRFSYEDIVFATNNFSANRKLGQGGFGAVYRGYFADLDLVVAVKKILSGSRQGKREYITEVKVISRLRHRNLVQLI 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244312g00001 401 CDD TM_EGFR-like 275 309 - -
Stsc244312g00001 401 ProSitePatterns Protein kinases ATP-binding region signature. 346 370 IPR017441 GO:0005524
Stsc244312g00001 401 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 266 IPR013320 -
Stsc244312g00001 401 Gene3D - 27 287 - -
Stsc244312g00001 401 Pfam Legume lectin domain 29 271 IPR001220 GO:0030246
Stsc244312g00001 401 SUPERFAMILY Protein kinase-like (PK-like) 322 401 IPR011009 -
Stsc244312g00001 401 CDD lectin_legume_LecRK_Arcelin_ConA 29 263 IPR001220 GO:0030246
Stsc244312g00001 401 PANTHER - 60 401 - -
Stsc244312g00001 401 FunFam L-type lectin-domain containing receptor kinase IX.1 27 272 - -
Stsc244312g00001 401 Gene3D Phosphorylase Kinase; domain 1 325 401 - -
Stsc244312g00001 401 Pfam Protein kinase domain 341 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc244312g00001 401 ProSiteProfiles Protein kinase domain profile. 340 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244312g00001 Stsc-Chr244312 5345 6548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244312g00001 14 401 Receptor kinase-like Gene Family AT5G10530 50.505 2.36e-122 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc244312g00001 Lectin_legB 4.9e-65 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244312g00001 - - adu:107487060 640.188