Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244283g00001 AGATACCTTCCAACCAAGGACAATAGAAAAGCAAAAGCTCTAGAAAAAGAGGTGAAAAAATGTATACTTCAATTGGTTAAGCAGAGAGAGGAATCACCTCATCATCACAACAGAGATTTGTTGCAAATGCTTCTTGAGTCTACCAAAAACAGTGATCTCACTCAAGATGCCATTGAAACCTTTATTGCTGACAACTGCAAGAACATATATTTTGCTGGATTTGAAACCACTGCAATTTCCATGGCATGGTGCCTCATGTTGCTGGCTTCAAATCAAGAGTGGCAAGATCGTGTTCGCGCCGAGGCGCTAGAAATTTGCAACGGTAGAATCCCAGACTATCATATGCTCAGTAAGATGAAGCAGCTAACAACGGTTATTCATGAAACACTACGGCTTTATCCACCACTACCTTTGACTGTAAAAGAGGCCTTAAAGGACATGAAATTTGGCAACATCAATGTCCCAAAAGGTGTTACAATATGGGCTATGACATTGACCTCACATACAGATCCAGAACTGTGGGGATCTGATGCCTATGAATTCAAGCCAGAAAGGTTTGCCAATGGAGTAAGTGGTGCATGTAAATTGCCACACATGTATATGCCCTTTGGATTTGGTTTAAGATCGTGTCTTGGAAGAGATTTGGCTATGACTGAACTTAAGATGTTGTTAAGTCATATTTTGTGTAACTTCTCTTTCAGCCTTTCTTCGAATTATGTTCATTCACCTGCTCTTAAGTTGATAATGGTGCCCCAACATGGAGTTCATTTGTTGGTAAAAAAGCTATCAACTATTACTCCTTAA 804 0.398 RYLPTKDNRKAKALEKEVKKCILQLVKQREESPHHHNRDLLQMLLESTKNSDLTQDAIETFIADNCKNIYFAGFETTAISMAWCLMLLASNQEWQDRVRAEALEICNGRIPDYHMLSKMKQLTTVIHETLRLYPPLPLTVKEALKDMKFGNINVPKGVTIWAMTLTSHTDPELWGSDAYEFKPERFANGVSGACKLPHMYMPFGFGLRSCLGRDLAMTELKMLLSHILCNFSFSLSSNYVHSPALKLIMVPQHGVHLLVKKLSTITP 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244283g00001 267 PRINTS E-class P450 group I signature 210 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PRINTS E-class P450 group I signature 61 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PRINTS E-class P450 group I signature 81 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PRINTS E-class P450 group I signature 123 141 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PRINTS E-class P450 group I signature 200 210 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PRINTS E-class P450 group I signature 164 188 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 Coils Coil 11 31 - -
Stsc244283g00001 267 SUPERFAMILY Cytochrome P450 1 260 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 203 212 IPR017972 GO:0005506|GO:0016705
Stsc244283g00001 267 PRINTS P450 superfamily signature 201 210 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PRINTS P450 superfamily signature 124 135 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PRINTS P450 superfamily signature 210 221 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PRINTS P450 superfamily signature 72 89 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 254 - -
Stsc244283g00001 267 Pfam Cytochrome P450 1 240 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc244283g00001 267 Gene3D Cytochrome P450 1 264 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244283g00001 Stsc-Chr244283 336 1825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244283g00001 13 259 Cytochrome P450 AT5G24900 48.810 8.96e-87 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244283g00001 K24544 - tcc:18591116 374.4