Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2441g00002 ATGGCAAGTGCTACTCATTCATTTCATTGTTACGGGGCTAGTGTTCTTGTTATGATCTTGGGGTGTTTCATCAGTAGCTGCATTTCTTCTAATCAGATTGGTTTGGGTTCGAGGATATTGGCCAGCAAGGGACAAACATGGGTTTCTGATAATGGTACATTTGCTTTTGGGTTCACAAAATCAGAGAATGATAATCGATTATTTCAGCTGGCCATTTGGTTTAATGAGCTTCCAGAAGATCCAACACTGGTTTGGTCACCTAACAGAGACTCTCCTGTATCCAAAGATGCAATGCTGGAGCTCGACACAACCGGCAACCTTGTTCTCATGGATGGAGACAACGCCGTTTGGACCTCAAACACCTCAGGTGCTGGTGTAGAAGCAGCAACCATGGAAGAATCCGGCAACTTCATTCTCCATGACAGTAGAAAAAACCTTGTGTGGCAGAGTTTTTTGCAACCATCTGACACACTCCTCCCAAACCAGCCCTTAACAGTTTCTTCAGAGTTAACAACACCAAAGTCTTCCTCTCATGAAGGCTACTATGCTCTCAAAATGCTTCCACAGCCTACTTCTTTGAGCCTTGCCTTGACTTACAATATACCTAAACCTTTCGAGGCTTCGAATGAATCATACACCAATTATTCCTATTGGCAGGGTCCTGATATCTCGAATGTGACGGGAAAAGTCATAGCAGTTTTAGACCAAGCTGGAAGCTTTGGAATTGTGTATGGAGAGGTTTCTGATGGAGCAGTTTATGTTCATAAGAATGACGATGATGATGCAGGCTTGTCTACTGCAGTTCACCAATCTACCCCATTGACTGTCCTTCGAAGATTAACGCTGGAAAAGAATGGCAACTTGCGTTTGTATCGATGGGACGATGATGTAAACGGATCGAGACAATGGGTGCCAGAGTGGGCTGCAGTTTCAAATCCATGCGATATTGCTGGAATTTGTGGCAATGGAGTTTGTAATTTGGACAGAACCAAGACAAATGCCTCTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGCAAGGAAGGCCAGTGCTATGAGAACTCGTCTCTTGTTGGAGAATGCAATTCAAGGCACGAAAACCAGACATCGCAGTTTAAGATGTCAACGGTGCAGCAAACAAATTATTACTATTCTGAATTTTCAGTGATAGCTAACTACAGTGATGTTGCTACAGTGTCAAAATGCGGGGATGCTTGCTTATCGAACTGTGACTGCGTTGCATCAGTTTATGGGCTAAATGAGGAGAGGCCATACTGCTGGGTATTAAGAAGCTTGGATTTTGGTGGTTTTGAGGATACTAGCTCAACCTTGTTTGTGAAGGTCAGAGCAAACAGCACAATGACACCGTATGGCAAAGGTGGAGGGTCTAATAGCTCTTCGGATGGGATGGGGAGTGCGAAAGAGAAGGCTGTGATTATTCCAACTGTTCTGATCATGATGGTTCTCATTGTTTTGCTATGCTTATTGCTGTCTTATAGTGTTCGCAGAAAACGAATGTTGAGAAGAGAAATGGAAAGTACCATGATCTTATCAGGTGCTCCCATGAATTTCACTTATCGCGATATGCAAATCAGGACTAGCAACTTTTCGCAGCTGCTAGGAACAGGTGGATTTGGGAGCGTGTACAAAGGAAGCTTGGGAGATGGGACACTAATTGCAGTTAAGAAGCTCGACAGAGTTTTGCCCCATGGAGAAAAAGAATTTATTACTGAAGTGAACACCATTGGCTCAATGCATCATATGAATTTAGTTCGCCTATGCGGCTACTGCTCCCAGGGATTGCATCGGCTTCTAGTTTATGAGTTCATGAAGAATGGTTCTTTGGATAAGTGGATCTTCCCTTCATATCAAGCAAGAGATAGACTACTAGATTGGCCAACACGGTTTTATATAGCTGTAGCTACTGCACAAGGGATAGCTTACTTTCATGAGCAGTGCAGGAATCGGATAATTCATTGTGACATTAAACCAGAAAACATATTGTTGGATGAAAACTTTTGTCCTAAAGTGTCTGATTTTGGATTAGCCAAATTGATGGGAAGGGAGCACTCTCATGTGATGACAATGGTAAGAGGGACAAGAGGTTATTTGGCACCAGAATGGGTTAGTAATCGCCCTATAACCGTAAAAGCCGATGTTTACAGCTATGGGATGCTTCTCCTAGAGATAATTGGTGGCAGAAGAAATCTTGATATGTCCTTTGATGCAGAGGACTTCTTCTTTCCTGGTTGGGCTTACAAGGAAATGAAAAATGGATCAACAATCAAAGTGGTGGCAGATAGAAGACTAAATGGGGTGGTGGACGAAGAAGAGCTAATGAGAACTCTGAAAGTTGCATTTTGGTGCATCCAAGATGAGGTTTTCTTGAGACCAACAATGGGAGAAGTGGTGCGGATGCTAGAAGGGTCAACCAACGTTAACATGCCTCCAATGCCTCAGACAGTACTAGAGTTAATTGAGGAAGGCTTAGAACACGTATATAAAGCCATGAAAAGAGAGTATAACCCTTGCAGCTCATTAACCATTACAAGCCATCTTACATCTCAAGCCACATGTAGCAATTCCACAATGTCACCAAGATAA 2604 0.4301 MASATHSFHCYGASVLVMILGCFISSCISSNQIGLGSRILASKGQTWVSDNGTFAFGFTKSENDNRLFQLAIWFNELPEDPTLVWSPNRDSPVSKDAMLELDTTGNLVLMDGDNAVWTSNTSGAGVEAATMEESGNFILHDSRKNLVWQSFLQPSDTLLPNQPLTVSSELTTPKSSSHEGYYALKMLPQPTSLSLALTYNIPKPFEASNESYTNYSYWQGPDISNVTGKVIAVLDQAGSFGIVYGEVSDGAVYVHKNDDDDAGLSTAVHQSTPLTVLRRLTLEKNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGVCNLDRTKTNASCTCLPGTSKVGKEGQCYENSSLVGECNSRHENQTSQFKMSTVQQTNYYYSEFSVIANYSDVATVSKCGDACLSNCDCVASVYGLNEERPYCWVLRSLDFGGFEDTSSTLFVKVRANSTMTPYGKGGGSNSSSDGMGSAKEKAVIIPTVLIMMVLIVLLCLLLSYSVRRKRMLRREMESTMILSGAPMNFTYRDMQIRTSNFSQLLGTGGFGSVYKGSLGDGTLIAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSQGLHRLLVYEFMKNGSLDKWIFPSYQARDRLLDWPTRFYIAVATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVMTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFDAEDFFFPGWAYKEMKNGSTIKVVADRRLNGVVDEEELMRTLKVAFWCIQDEVFLRPTMGEVVRMLEGSTNVNMPPMPQTVLELIEEGLEHVYKAMKREYNPCSSLTITSHLTSQATCSNSTMSPR 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2441g00002 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Stsc2441g00002 867 PANTHER OS07G0415500 PROTEIN 14 819 - -
Stsc2441g00002 867 Gene3D - 34 153 IPR036426 -
Stsc2441g00002 867 ProSitePatterns Protein kinases ATP-binding region signature. 540 563 IPR017441 GO:0005524
Stsc2441g00002 867 Gene3D Phosphorylase Kinase; domain 1 498 609 - -
Stsc2441g00002 867 SMART blect_4 38 154 IPR001480 -
Stsc2441g00002 867 Pfam S-locus glycoprotein domain 260 341 IPR000858 GO:0048544
Stsc2441g00002 867 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 168 IPR036426 -
Stsc2441g00002 867 PIRSF SRK 1 861 IPR024171 GO:0004674
Stsc2441g00002 867 Gene3D Transferase(Phosphotransferase) domain 1 610 823 - -
Stsc2441g00002 867 SMART serkin_6 534 807 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2441g00002 867 FunFam Serine/threonine-protein kinase 34 152 - -
Stsc2441g00002 867 Pfam Protein kinase domain 537 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2441g00002 867 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 610 817 - -
Stsc2441g00002 867 Pfam D-mannose binding lectin 82 168 IPR001480 -
Stsc2441g00002 867 CDD B_lectin 42 154 IPR001480 -
Stsc2441g00002 867 CDD STKc_IRAK 540 809 - -
Stsc2441g00002 867 ProSiteProfiles Protein kinase domain profile. 534 818 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc2441g00002 867 SUPERFAMILY Protein kinase-like (PK-like) 512 808 IPR011009 -
Stsc2441g00002 867 FunFam serine/threonine-protein kinase PBS1-like 502 609 - -
Stsc2441g00002 867 ProSiteProfiles Bulb-type lectin domain profile. 32 152 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2441g00002 Stsc-Chr2441 2746 6484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2441g00002 495 817 Receptor kinase-like Gene Family AT5G20050 45.401 1.40e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc2441g00002 Pkinase 9.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2441g00002 - - aip:107616087 1603.19