LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc244121g00001	ATGGGTTGCGTGTTCGGGAAGCCGGCCGGTAACGAAGCTCAGCGCCGTCGCCGGAGCAAACAGAGAAGCTCTGCTCGCGATGGAAGTGATAATAATGATGTTAGTAATGCCGTTAGGGTTCGGGAGAAGCAGAGGAACCGCCGGAACTCCACCGGTGATGTTCCGGTAAGTCTTCCGGCACCGGAACGCCGGAAACCGAGGCTCGATCCGTTCGCGGTTACTCAGCAGGGATGGCCGTCGTGGCTTATGGCCGTCGCCGGTGAAGCCATCGGCGATTGGACTCCTCGCCGCGCCAACACCTTTGAGAAGCTCGCTAAGATTGGGCAAGGGACTTATAGCAATGTGTACAAAGCCAGGGACCTTTTGAGTGGGAAGATTGTGGCTTTGAAGAAAGTTAGGTTTGATAATTTGGAACCTGAGAGTGTGAAGTTCATGGCTAGAGAGATTCTTGTTCTGAGGAAGCTTGATCATCCAAATGTTGTGAAGCTTGAGGGTTTGGTCACTTCTAGAATGTCTTGCAGCCTTTACTTGGTTTTTGAGTATATGGAACATGATCTTGCAGGTCTTGCTGCTGCTCAAGGTGTCAAGTTCACTGAACCTCAGGTCAAATGCTTTATGAAGCAATTGCTCTCAGGCCTTGAGCATTGCCACAGCCGAGGTGTATTGCACCGTGATATTAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTCTTTGACCCTAACAAGAAGCAGGCCTTGACGAGCAGAGTTGTAACTCTCTGGTATCGTCCCCCCGAGCTTCTTCTTGGGGCCACATTTTATGGTGTTGGTGTTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGGACGGAGGTTGAACAACTTCACAAAATATTCAAGTTATGTGGCTCTCCATCTGAGGAATATTGGAAGAAATATAAATTGCCAAATGCTACAATCTTTAAGCCACAGCAGCCGTATAAACGTTGCATCACAGAAACTTTCAAGGATTTTCCTCCATCTTCAATACCTCTGATTGAAACTCTTCTTGCAATAGATCCTGAAGGTCGCGGCACTGCCTCAGCTGCTCTAAATGGTGAATTCTTTACAACTGAGCCCTATGCTTGTGAACCTTCGAGTTTACCGAAATATCCTCCCAGCAAAGAACTGGATGTAAAACTAAGAGACGAAGAAGCAAGAAGGCAAAAAGCTCTACATGGAAAGGCTAATGATGGTGCCAAAAGAGTCAGAGCACGCGAGCGTGGTCGAGCTATTCCAGCCCCTGAAGCTAATGCAGAGATCCAAACAAACTTAGATAGGTGGAGAGTGGTGAACCACACAAATGCAAAGAGCAAGAGTGAGAAATTTCCACCTCCTCATCAAGATGGAGCTGTTGGATATCCACAAGATGCATCTTCACAAAAAGGGCCTGTTTCATTTGGTGCCACTGACACTACTACTTCCTTTGGCTCAGAAACATTTGATTCTAAACAATCTCATCATGATGGGATTCACAGAGGGAGGAAAACAAGAAAAGAAGATTCAAACAGCAGTGCCTCATCATGGAAATTCATGCGTCCATTCAAGCCATCAACAGTTGGTCTTTCAATGGATTTATTATTTAGGAGCAAATAA	1683	0.4664	MGCVFGKPAGNEAQRRRRSKQRSSARDGSDNNDVSNAVRVREKQRNRRNSTGDVPVSLPAPERRKPRLDPFAVTQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLLSGKIVALKKVRFDNLEPESVKFMAREILVLRKLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAAQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPNKKQALTSRVVTLWYRPPELLLGATFYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYKLPNATIFKPQQPYKRCITETFKDFPPSSIPLIETLLAIDPEGRGTASAALNGEFFTTEPYACEPSSLPKYPPSKELDVKLRDEEARRQKALHGKANDGAKRVRARERGRAIPAPEANAEIQTNLDRWRVVNHTNAKSKSEKFPPPHQDGAVGYPQDASSQKGPVSFGATDTTTSFGSETFDSKQSHHDGIHRGRKTRKEDSNSSASSWKFMRPFKPSTVGLSMDLLFRSK	560

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc244121g00001	560	SUPERFAMILY	Protein kinase-like (PK-like)	95	390	IPR011009	-
	Stsc244121g00001	560	FunFam	probable serine/threonine-protein kinase At1g54610	88	183	-	-
	Stsc244121g00001	560	MobiDBLite	consensus disorder prediction	511	532	-	-
	Stsc244121g00001	560	Pfam	Protein kinase domain	101	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc244121g00001	560	PANTHER	CELL DIVISION PROTEIN KINASE	99	389	-	-
	Stsc244121g00001	560	ProSitePatterns	Protein kinases ATP-binding region signature.	107	130	IPR017441	GO:0005524
	Stsc244121g00001	560	Gene3D	Phosphorylase Kinase; domain 1	88	183	-	-
	Stsc244121g00001	560	SMART	serkin_6	101	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc244121g00001	560	MobiDBLite	consensus disorder prediction	488	510	-	-
	Stsc244121g00001	560	MobiDBLite	consensus disorder prediction	418	442	-	-
	Stsc244121g00001	560	MobiDBLite	consensus disorder prediction	1	69	-	-
	Stsc244121g00001	560	Gene3D	Transferase(Phosphotransferase) domain 1	184	425	-	-
	Stsc244121g00001	560	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	221	233	IPR008271	GO:0004672\|GO:0006468
	Stsc244121g00001	560	ProSiteProfiles	Protein kinase domain profile.	101	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc244121g00001	560	MobiDBLite	consensus disorder prediction	418	539	-	-
	Stsc244121g00001	560	MobiDBLite	consensus disorder prediction	11	27	-	-
	Stsc244121g00001	560	FunFam	probable serine/threonine-protein kinase At1g54610	184	425	-	-
	Stsc244121g00001	560	CDD	STKc_CDK9_like	101	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc244121g00001	Stsc-Chr244121	3304	7464	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc244121g00001	93	422	Core Cell Cycle Gene Families	AT5G10270	51.275	8.95e-117	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Stsc244121g00001		Pkinase	3.4e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc244121g00001	K08819		-	gmx:100807756	954.125