Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244085g00001 ATGGCGAGAACCCGTTCCGTTGATAAAAGTGGAATGAAGAAAGGTGCTTGGACTCCCGAAGAAGATAGCAAGCTAATTGCTTATGTTACTAGGTATGGTTCCTGGAATTGGCGACAACTCCCTAGGTTTGCAGGTCTGGCAAGGTGTGGAAAGAGTTGCAGATTGAGATGGCTGAATTATCTGAGACCCAACATCAAACGAGGGAACTACACTCAAGAAGAAGAAGAAATTATTGTCACAATGCACAAGAAGCTGGGCAACAAGTGGTCTGTGATCGCAGCGAATCTACCGGGAAGAACAGATAACGATGTAAAGAACCATTGGCACTCCTCCCTCAAGAGGCGCTCTCATAAGAGCAACACTGCCGCCGCCGCCGCCGCCACCACCAACAACGCTAAACCAAATGATTGTGCTTCCAATAATACAGAAGAGAACAGCAGCAACCATACTAATAATAACTCTTCCAATAATTCTTCTAATTCGGACTTTGATGACATCGATTTTCTGAATTATTATACACAGCCCGCAATTGAAAATCTCTGGTCAGAGACATTTCAAGCTGAACTCGACAATGGGAACGGTGACTCTACTAGGCATGATTCATGGGAATTGATGATGTTGTCTCCGGCGCAATCATCATCGTTATCAAGTGCAGAAGATAACTTTACCTTTGATGCAGAAACAACAAACACAGCTTTTGATGAAGAGTTTTTGTTGACACAACAGTGTTCCGTGGATTTGTCTTATGTTCCAAATGAACTGCTTATTACACCGTACGTGGACGAGTATTTTTCTGATGTGCCTGTGTACGATGACTTAGATCTGTGGTCTCAAACCAATAATTTTGCATGA 852 0.4319 MARTRSVDKSGMKKGAWTPEEDSKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTQEEEEIIVTMHKKLGNKWSVIAANLPGRTDNDVKNHWHSSLKRRSHKSNTAAAAAATTNNAKPNDCASNNTEENSSNHTNNNSSNNSSNSDFDDIDFLNYYTQPAIENLWSETFQAELDNGNGDSTRHDSWELMMLSPAQSSSLSSAEDNFTFDAETTNTAFDEEFLLTQQCSVDLSYVPNELLITPYVDEYFSDVPVYDDLDLWSQTNNFA 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244085g00001 283 MobiDBLite consensus disorder prediction 117 160 - -
Stsc244085g00001 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc244085g00001 283 FunFam MYB-related transcription factor 13 66 - -
Stsc244085g00001 283 CDD SANT 69 112 IPR001005 -
Stsc244085g00001 283 MobiDBLite consensus disorder prediction 100 160 - -
Stsc244085g00001 283 CDD SANT 16 61 IPR001005 -
Stsc244085g00001 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc244085g00001 283 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc244085g00001 283 SMART sant 66 114 IPR001005 -
Stsc244085g00001 283 SMART sant 13 63 IPR001005 -
Stsc244085g00001 283 Gene3D - 68 162 - -
Stsc244085g00001 283 Gene3D - 5 67 - -
Stsc244085g00001 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 204 - -
Stsc244085g00001 283 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Stsc244085g00001 283 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc244085g00001 283 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc244085g00001 283 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244085g00001 Stsc-Chr244085 2766 4662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244085g00001 1 235 MYB Transcription Factor Family AT2G31180 40.562 4.05e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc244085g00001 Myb_DNA-binding 7.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244085g00001 K09422 - gmx:100811124 243.047