Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc244032g00001 ATGGTAGGACTTGAAATCATACCAATAGGAACAATTTTTGCAGTGCTAACCAACCAGGTCTTGAGAACGGCTCATGCAGCAGCAGATGTTCTTATAGGCAAAGAAAGTTTCAAAATCCTCTCAAAACACCTCTTAGATATTGTGCCTGTTCTCAAGGAACTACAGCTTCAAGAGCTCAATGAATCTCAAGCTGCAAGGGCTGCTTTGGAATCTCTAGAATCAGATGTGAAAAGGGCTAACAATTTGGTTGAGAAGTACAGGAACCGTGGCAAATTCTACCTTCTGGTTAAGTGCAGGTACATAGTTGGGGAGGTTGAGCAAGTCACAAGAGACATTGGCAAGTCTTTGGCTGCGCTTTCGCTTGCGAATACTGAAGTCCTAACAAGAATCTCTGATCAGGTTGATAGGCTGCAGAATGAGATGCAGAGAGTGGAGTTTGAGGCTTCACGATCGCAGCTTCAGATTGTTGAGAAGTTGGATTATGCACTTAGAGAACAGAAACTTGATCAGGCTTTCGCGAATGACATGCTTGAGGAAATAGCAAGAGCTGTTGGAGTTCCAGTGGAGCCTTCAGAGATAGGCAAAGAATTGGCCAGCATTAGGAAGGAGAAAGAGGAAGCTGCAAACCGGAAAGAGCGAGCCGAGTACATATTCTTAGAGCAGATCATTGAGTTACTCTCTAGAGCTGATGCTGCAAGGGACTATGAAGAAGTGAAGAAACAATACTTTGAAAGAGTTCAAGCAATAGAAAGATATGATTCAAGGGAAACATATATCTCACCCTTCAATCCTTTCCTTTGCTCAATAACTGGAGCGGTTATGGTAGATCCTGTTAGCCTTTGTACTGGTACTACATGTGAGAGATCTGCCATTGAAGATTGGTTTCACAATGGGAACCGAACGGATCCAGAAACATACGAGGTTCTTGAAGATACTACCTTGAGGTCTAACATTCCACTAAGACAATCCATAGAAGAATGGAGAGAACTCAATTATTGTCTTGCTATAAGGTCTATCAAGGAAAACCTGATCACAAATTATGAAGTGCATGAGTCTTTGAGCCTAATGCAGGCTCTTATGAGAGAAAATTCCATTAACAAGGATTGGCTTTCTATTGGAGGGGTAACTGATGTTGTTATCTCTATACTTTGGAACTCTAATTACAAAGCAGCCAAGTTGAAGATTCTGATTACTCTGAAGGATGTTGTAGAGGGACATGCAAGAAACAAGGACAAGGTGGCTGAATCTCATGGATGGGATCAGATTATTTGCTGCTTAGGGAGTGATTCTAGCACTTCAAAGGCAGCAATTGATCTCCTGTATGAATTGCTTCAAGCGCGATCCGGTTGGAACGAATGCTTTTGCAAAAAGCTCTCTGAGAATCAGAATGCAATTCCTTTCCTTGTAAGCCTTCTAAAGGGATCAGACAACGATTCAGCAGAGGCAGCAGAAAAGATTTTGATGGAACTTTTCAGAATAAATGAGGACAGTATTACCACTGCTGCTAGATTTGGCTGGTATAAACCCCTCGTCGATCACATGATTCAAGAACCAGATTCGAGAATAGCAATGGCGAAATGCATAGTAAACTTGGATTTAAACCTTTTAGAGTTGAAAGAAATTGGTGAGGAAGGTGTTATAACTCCTCTGCTAGAAATGCTATCTGGAAGCATTGAATCAAAGGACTTGTCATTATCAGCACTGGTAAAACTGGCAGCATGTCATCCAAACAAGAGAATAATCGCAGAATCCGGAGGCATTCCTTTGATTCTTGATCTAACATTCTCAACTCGGATGAGGACATTCATTACTATCAAATGCTGTGAAATCCTGGAGAAGCTTTCCTCTGATGAAGATGGAATAGACTTGTTTGTGGACAGAGAAGGGAATCAACTTGAGTTAGACTCCATCATCACCAATTTGCTAGCACTGCAGCAGAGTTCCAACTCTGGCTGCAATTTTCGCAAGCCTGCGCTGCGTGCTCTTCTAGGAATTTGCAACTTTGAGACTGGTTTAATTAAGAAGGCAATTCTTGCAGCCAATGGTGTGTCTCTAATTCTTCCACTTCTTGATGACTCTGACTCAGAAATCCGAGAAACTGCAATAAACTTGCTCTTTCTTTTCTCCCAGCACGAGCCGGACGGAGTAGTTGAGTATCTCTTCAGGCCTAGAAGGCTGGAAGCCTTGATTGGGTTTCTTGAGGATGATGAGAATGACAATGTGAGGATGGCAGCGGCCGGATTACTCGCAAACCTTCCTAAATCAGAAAGAGAACTCACTATGAAGTTGATTGAATTAGGTGGACTAGATGCTATAATAAGCATATTGAAAACAGGTACAATGGAAGCTAAGGAAAATGCTCTGAGTGCACTCTTTAGATTCACTGATCCTACAAACATCGATTCGCAGCGCGATCTTGTTAAACGAGGGATATACCCTCTACTTGTGAACTTTCTCAACACTGGTTCTGTCACAGCAAAGGCAAGAGCAGCTGCATTCATTGCTGATCTTTCAGTGAGCACTCCAAAGCTCACATTTGTTTCTAAATCTCCCAGCTGTTGGTTTTTCAAGTCTTCAAGAGTTCCCTTATGCCTGGCACATGGAAGCATATGCAGTGTTGCCACCACATTTTGCCTAATTGAAGCAAATGCTTTACCTGGATTGATCAGATTATTGCATGGTGAGGTTCATGCTACTGCTTATGAAGCAATTCAAACACTTTCCACATTGGTTTTGGAGGATTTTCCTCAGAGAGGAGCCATAGTCTTGCATAAGAACAATGCAATAACACCCTTGTTGGAGATTCTGAATTGGGGTTCTGATTCTCTCAAAGCTGAAGCTCTAGGACTATTGGAAAAAGTCTTTGTGTCAAAGGAAATGGTGGAGCATTATGGAATAACAGCCAGGCTGAGGCTAATTAGTATCACTGAAATGAATATCTATGGAGATGGCCACCTTAGGAGGAAAGCTGCTAAGGTACTCTCCTTGCTCGAACGATATTCGAGGTCATCGTCCTCTGCAATCTCCGGTGTTCCCGAGTGA 3042 0.4234 MVGLEIIPIGTIFAVLTNQVLRTAHAAADVLIGKESFKILSKHLLDIVPVLKELQLQELNESQAARAALESLESDVKRANNLVEKYRNRGKFYLLVKCRYIVGEVEQVTRDIGKSLAALSLANTEVLTRISDQVDRLQNEMQRVEFEASRSQLQIVEKLDYALREQKLDQAFANDMLEEIARAVGVPVEPSEIGKELASIRKEKEEAANRKERAEYIFLEQIIELLSRADAARDYEEVKKQYFERVQAIERYDSRETYISPFNPFLCSITGAVMVDPVSLCTGTTCERSAIEDWFHNGNRTDPETYEVLEDTTLRSNIPLRQSIEEWRELNYCLAIRSIKENLITNYEVHESLSLMQALMRENSINKDWLSIGGVTDVVISILWNSNYKAAKLKILITLKDVVEGHARNKDKVAESHGWDQIICCLGSDSSTSKAAIDLLYELLQARSGWNECFCKKLSENQNAIPFLVSLLKGSDNDSAEAAEKILMELFRINEDSITTAARFGWYKPLVDHMIQEPDSRIAMAKCIVNLDLNLLELKEIGEEGVITPLLEMLSGSIESKDLSLSALVKLAACHPNKRIIAESGGIPLILDLTFSTRMRTFITIKCCEILEKLSSDEDGIDLFVDREGNQLELDSIITNLLALQQSSNSGCNFRKPALRALLGICNFETGLIKKAILAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPDGVVEYLFRPRRLEALIGFLEDDENDNVRMAAAGLLANLPKSERELTMKLIELGGLDAIISILKTGTMEAKENALSALFRFTDPTNIDSQRDLVKRGIYPLLVNFLNTGSVTAKARAAAFIADLSVSTPKLTFVSKSPSCWFFKSSRVPLCLAHGSICSVATTFCLIEANALPGLIRLLHGEVHATAYEAIQTLSTLVLEDFPQRGAIVLHKNNAITPLLEILNWGSDSLKAEALGLLEKVFVSKEMVEHYGITARLRLISITEMNIYGDGHLRRKAAKVLSLLERYSRSSSSAISGVPE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc244032g00001 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Stsc244032g00001 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Stsc244032g00001 1013 SMART arm_5 713 754 IPR000225 GO:0005515
Stsc244032g00001 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Stsc244032g00001 1013 SMART arm_5 574 616 IPR000225 GO:0005515
Stsc244032g00001 1013 SMART arm_5 756 796 IPR000225 GO:0005515
Stsc244032g00001 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Stsc244032g00001 1013 Gene3D - 9 123 IPR036537 GO:0007166
Stsc244032g00001 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 334 IPR013083 -
Stsc244032g00001 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Stsc244032g00001 1013 Coils Coil 127 154 - -
Stsc244032g00001 1013 CDD MLKL_NTD 34 145 - -
Stsc244032g00001 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 1005 - -
Stsc244032g00001 1013 Coils Coil 62 89 - -
Stsc244032g00001 1013 CDD RING-Ubox_PUB 265 314 IPR045210 -
Stsc244032g00001 1013 Gene3D - 516 849 IPR011989 -
Stsc244032g00001 1013 Pfam U-box domain 265 329 IPR003613 GO:0004842|GO:0016567
Stsc244032g00001 1013 SUPERFAMILY RING/U-box 248 330 - -
Stsc244032g00001 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Stsc244032g00001 1013 Gene3D - 348 503 IPR011989 -
Stsc244032g00001 1013 Gene3D - 850 1008 IPR011989 -
Stsc244032g00001 1013 SUPERFAMILY ARM repeat 374 713 IPR016024 -
Stsc244032g00001 1013 SUPERFAMILY ARM repeat 635 997 IPR016024 -
Stsc244032g00001 1013 Coils Coil 197 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc244032g00001 Stsc-Chr244032 995 4989 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc244032g00001 262 970 U-box Gene Family AT1G76390 26.903 4.08e-38 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc244032g00001 - - gmx:100783638 1537.7