Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243g00004 ATGATGATGATGGCTACTACTACTGCAGATGATGATGAAAGGGTGAAGCAGCTTCCTCCTGGGTTTTTGTTCTCTCCAACGGATGAAGAACTCGTTCTTCACTTTCTATATTCTAAGGCTTCTCTTCTTCCATGCCATCCCAACATCATCCCTGATCTTGATCTTGATCTCTCTGATCCTTTTCAACTCAACGGTAAAGCGTTGTCAAGCGGGAATCAATACTATTTCTTCAGCAAAGTGAAAGAAAAAAAAGAAACAGAAAATGGGTATTGGAAGGAAATAGGTGAAAGCGAAGCTATAATGTCGTCATCATCAGAAAATGAGAAGAAAGTAGGGACCAAGAAGAAGATGGTATTCCACATAGGAGAAGCTCCACACGGCATTCAAACCACTTGGCTCATGCAAGAATATCATATTTCTCCATCCTCTTCTAATAATAACCACATTATTGCTACTAGTATTAGAGGCAGAAGAAAACACGATCACGATGAAAGTTGGAGCAAATGGGTTTTGTGCAGAGTGTATGAAAAGAAGAGGACCGTACGAGGTGTAAACTACTCTAGCGATGATGACGAACACGACGAAGATTACGACGACAGTGGGACAGAGCTATCTTGGCTTGACGAAGTTTATCTCTCTTTGGATGATGATCTTGAACAAGAAATAAGCATCTCCATTTTAGATTGA 687 0.4047 MMMMATTTADDDERVKQLPPGFLFSPTDEELVLHFLYSKASLLPCHPNIIPDLDLDLSDPFQLNGKALSSGNQYYFFSKVKEKKETENGYWKEIGESEAIMSSSSENEKKVGTKKKMVFHIGEAPHGIQTTWLMQEYHISPSSSNNNHIIATSIRGRRKHDHDESWSKWVLCRVYEKKRTVRGVNYSSDDDEHDEDYDDSGTELSWLDEVYLSLDDDLEQEISISILD 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243g00004 228 PANTHER NAC TRANSCRIPTION FACTOR 56 17 184 - -
Stsc243g00004 228 ProSiteProfiles NAC domain profile. 18 177 IPR003441 GO:0003677|GO:0006355
Stsc243g00004 228 Pfam No apical meristem (NAM) protein 19 139 IPR003441 GO:0003677|GO:0006355
Stsc243g00004 228 Gene3D NAC domain 27 182 IPR036093 GO:0003677|GO:0006355
Stsc243g00004 228 SUPERFAMILY NAC domain 16 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243g00004 Stsc-Chr243 26756 29256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243g00004 18 185 NAC Transcription Factor Family AT1G69490 37.500 3.88e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc243g00004 NAM 5.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243g00004 - - adu:107470472 305.064