Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243988g00001 ATGGTGATGATGGAATTGGAAGAAACAAAGAAGTTGACAGAGGAGCTACTACAAGGTTTGGAAATGGCGAGACAGCTCCAAATCCATCTCCATGTAGCTTCAACTCCCCACGAAACCCGTGACTTGTTGATCCAAAACATCATCTCTGCTTTTGAAAACGCACTCCACATCCTCAAATGGACACCGCCGCCATCCGCCGCCGCTGATCCCTCGCCGTCACCTTCTCCCGTCGTTGGAATCAAAATGCTCCATGAGTCGCCACCTTTGAACACCGGCAGCCCCCACAGTGAAGAATCCGATAGAGATTTAAGGGATCAGGATCCCACTGCTTCCAGAAAAAGGAAGAATTTGGCAAGATGGACAAAACAGATTCGAGTTAGCCCGGGAATGGGAGGGGAAGGGCCTCTTGACGATGGATACAGTTGGAGAAAATATGGCCAGAAAGACATCCTTGGAGCCACCTATCCAAGAGGATACTACAGGTGCACACACAGAAATGTTCAAGGATGCATGGCGACAAAGCAAGTGCAAAGATCCGATGAAGACCCCAACGTGTTCGAAATCACATACAGAGGATCACACACCTGCACCTTGGCCTCATCATCATCCAATAATATTAATGCTTCTCTTCTTGCATCAACAACTAGTCCAAATAACAATAATGTTCTGCAAAGCCTTGACCAACAACAACAACAACAACAATCACCTATGATGAATGAATTGCTCTTGAACCTCAGGGCAGGGTTGAGGGTCCAAACAGAGAATCTAGATTTCAACTTCCCTAATTCAAACCATGTTTTCTCATCACAAACACCACCACCACAACCTCATCAACCTATGCTTGCTGATAATAACTTTCCCTCCTATATGTCCCCTGCTACATCTGGGATAAGTCAATTTTCAATGTCTTCAACTCCTAATAACTTTGCTACTTCTTCTGGGAATCAGATCAATGAAATCATCTCTGCTTCTGCTGCTGCAACTACCTCTGCTTCAAACTCAAACTCACCAACCGTTGGATTAGACTTTCCCTTTGACCAATTTGAATTGGACGCTCAAAACAATTTTATGTTCGGTAATCCGCGATTTTTTCCTTAA 1098 0.4472 MVMMELEETKKLTEELLQGLEMARQLQIHLHVASTPHETRDLLIQNIISAFENALHILKWTPPPSAAADPSPSPSPVVGIKMLHESPPLNTGSPHSEESDRDLRDQDPTASRKRKNLARWTKQIRVSPGMGGEGPLDDGYSWRKYGQKDILGATYPRGYYRCTHRNVQGCMATKQVQRSDEDPNVFEITYRGSHTCTLASSSSNNINASLLASTTSPNNNNVLQSLDQQQQQQQSPMMNELLLNLRAGLRVQTENLDFNFPNSNHVFSSQTPPPQPHQPMLADNNFPSYMSPATSGISQFSMSSTPNNFATSSGNQINEIISASAAATTSASNSNSPTVGLDFPFDQFELDAQNNFMFGNPRFFP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243988g00001 365 MobiDBLite consensus disorder prediction 64 134 - -
Stsc243988g00001 365 Coils Coil 3 23 - -
Stsc243988g00001 365 ProSiteProfiles WRKY domain profile. 131 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243988g00001 365 MobiDBLite consensus disorder prediction 95 114 - -
Stsc243988g00001 365 SUPERFAMILY WRKY DNA-binding domain 134 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc243988g00001 365 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 7 286 IPR044810 GO:0003700
Stsc243988g00001 365 Pfam WRKY DNA -binding domain 137 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243988g00001 365 Gene3D WRKY domain 119 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc243988g00001 365 SMART WRKY_cls 136 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243988g00001 365 FunFam WRKY transcription factor 53 122 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243988g00001 Stsc-Chr243988 2894 4385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243988g00001 8 263 WRKY Transcription Factor Family AT4G23810 40.000 1.15e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc243988g00001 WRKY 4.8e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243988g00001 - - gmx:100812027 343.199