Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243965g00001 ATGGATGCAAAGCTTTATGGTGGAGCTTACCTCTCTTCCTTTGTTGATGCTGTTTTGGACAACTTGTCTAAAATACTTGAAGATGATAACTCTGTCCTCACTGGAAACTACTCTGCCATGAAGTTGCTTCGAAGTTTGGAGGAATGTCTGTATGATGTCCGACCTGTTCTTGATGATGCTGAGCACAAACAGTTCACTGACAAGAGAGTCAAAAACTGGCTTAGTGATCTCCAAGATGCTCTCTATTTCGCTGATGACTTGCTCGATCAACTCTCCACTAAAACTGCCACTGCCACTCCAAGGGATCCAGGTTTCTCTTCTTATGTTTCTTCTGTTGTTGATTCATCTGTTGAAGGCTGTGGTGACATGGAAAACCTAGTTCAAAGACTAGAATCTGTTGTAGCACGCAAAAAAATTTTTCGTCTAAAAGAGTCCGCCGAGGTGGACATGTTATCATGCAGGACTCCATCCACATCTCTCGTTGTTAGTTCTGACATATTTGGTCGGGACAAAGACAAGGAGGAGATAATTAAATTGCTGTTAGCTGATACTTGTCATGCTCAATCATCACCTTTTACAGTTATCCCAATTTGGGGTATGGGTGGAATAGGAAAAACTACCTTGGCTCAACTGGTTTACAGTGATGCCAAAGTGGTAGAAAATTTTGACATTAGAGTGTGGGTGTGTGTAGCTGAAAATTCAGACCCTGTTCATATCACAAGGACAATAATAGGGGCAATAGATTCTAGTCCCGGCAGCATGGACAATTTTGATGTTCTTCAGACTAAGTTGAAGGACAAGTTGATAGGAAAGAAATTCTTACTTGTTTTAGACGATGTCTGGCATGGTGGACAACGCACGTGGGAGAATCTTCTAAAACCTTTTCAATATGGGAATAATGGAAGTAAAATTCTGTTAACAACCCGGATTGAAAAGGTTGCTTCTACGTTCGCTGCTACCAGTCAACATTATCGACTAGATTTATTGTCCGATGAAGATTGTTGGTCGGTGTTTTTGAAGCATTCATCTATTTCTACTAATTTAGAACAATATGCAACTCTAGAACCAATTGGTAGAAATATTGTTGAAAAATGTAAGGGATTACCTTTGGCTGTGAAGACACTTGGAGGTTTATTGCGCAACAAGTGTGATGTAGGGTATTGGAAGAAAATACTTGAAAGTGAAATTTGGGAGTTCCCGGAAGATGAAAGTGAGATTGTTCCCGCACTACGAGTAAGTTATCACTACCTCCCTTCACATTTAAAGCGGTGCTTTGTTTATTGCTCATTATTCCCCGAAGATTATCAATTTGACAAAGACGAATTAATCTTGCTATGGATGGCTGAAGATCTTTTACGTCCAATGAAAAACAACACATTAGAAAATATTGGTTCTGAATATTTTGATGAATTAGTTGCAAGGTCATTTTTTCAATCTTCCAGTGCTTCTGCTGGGTTATTTGTAATGCATGATCTCATGCATGATCTAGCAACATTTTTTGCTGGAAAATTCTTTTTTAGAGAATTTGGCAACCAAAGCATAGTTGACAGCAAAACTCGTCATTTGTCATATGAATTGATTTATTTGCGTTATTTGAATCTCTCTGAAACACCTATTGTCACATTGCCTGAATCATTGTGTAAATTATACAATCTCCAAACCTTGAAGTTGAGAGATTGTAATAAGCTTGAAATGCTTCCCAGCCGCATGCAAGATCTTGTGAACCTGCGCCACCTTGATACCAGAAGAACTTATTGTTTGAAAGAGATGCCAAAGGGAATGAGCAAGCTAAAACACTTGAATTTATTAGGACATTATGCTGTGGGAGAGCATGAAGAGAATGGGATAAGAGAATTGGGACCAATTGATGTTCATGGCTCATTTCGCATTTCCAACTTAGAGAATGTGAACAACAGCAGCGAAGCTTTGGAGGCAAAGATGGGTAAGAAGAAGCACATCAACAAGTTAAAATTAGTCTGGTCTCGTTCAGATGGTAATACTGTGGATGTTCATGCTGAAAGAGATATACTTAAAGAGTTACGTCCTCATGAAAACTTGAAGAAGCTATCAATTTATCATTATAGGGATGAAATAATCCCGGATTGGTTGGGCCTTTCTTGCTACTCCAATATAACCAAATTGAGTATGTATGATTGTAAGAATTGTCGTGAGCTTCCTTCGCTCGGACAGTTACCCTCTCTACAGCATCTGGTGATTTTTGAACTGCATAGGTTGGAGAGAATTGGTGAGGAGTTTTACAAGAGCGTTGAATCATGTCATGATGGGACATGGACGCCCTTCAGATCTCTTGAATACCTGAAATTTTATGGCATGAACGGTTGGCGAGAGTGGCATATTCCTGATAAGTTGGATGTATTTCCGAAACTTAAAACCCTTACAATGCATAACTGTCCGGTGTTAAGTGGAGATCTGGCTGCTCGCCTTCCGGCTCTGGAGCAACTTAACATTTGGGAATGCGAAGGGCTTTCATATTCGCTGCTGAGAGCTCCCAAGCTTCACTCATTAAATGTAAAAGGTTTGGGGAATTCTGCTCTTTTAACGGGGGCACCGCACAAAATAAGAATTGTGGACACTCAACAGGTGCAGTCCGTATTGGAGTGGCTTCTCCACATCCAAGCGCCCTGTTTCCAACGCTTGATAATCCAGAATTGCAGGCCAACCATATCAATTTCGGGAGATTATTTGCCCGCTTCATTACAATATCTGCAAATTCAGAATTGTTCAAAATTAACATTCCCAGAGCCACTGGAACACAAGTTGCTAACGGAGATAGATGTGTACGAGTGTAATTCAGTGAAGTTGTTTCCATTGGGGGCCCTTCCAAATCTCAAGACACTTACAATCAGATATTGCCCAGAAATTAATTGTTTTGAAGAGGAATGCCTCCCGCCGAGCTTGACAACTCTTAAGATCCGTAAATGCCAGAAACTAGAGAGGTGGATAACATCCAATGGTGGTTTGCAGAGTGAAGGCCTTACCCATCTTATCCTTGAAGAATGGAATGAAGTTAAGTCGTTCCCAACAGAGGGTAGCCTTCCTGCTTCCCTTCAGTCTCTAAAATTGTCTGGCTTTCCAAATCTGGAGAGGCTAGACTGCAAGGGCCTTCACCATCTCACCTCCCTCAAAGAATTATCAATTGTTGGCTGTCCAAAGCTGGAGAATATCACGGAAGAAAGGCTGCCTGCCTCCTTAACAAAACTGTACATAAGTGGAGAATGTCCGTTGACGAGTAAGCTGCAAGAGATGAACGACCCACGGATTCAAATCGACAGATGA 3297 0.4089 MDAKLYGGAYLSSFVDAVLDNLSKILEDDNSVLTGNYSAMKLLRSLEECLYDVRPVLDDAEHKQFTDKRVKNWLSDLQDALYFADDLLDQLSTKTATATPRDPGFSSYVSSVVDSSVEGCGDMENLVQRLESVVARKKIFRLKESAEVDMLSCRTPSTSLVVSSDIFGRDKDKEEIIKLLLADTCHAQSSPFTVIPIWGMGGIGKTTLAQLVYSDAKVVENFDIRVWVCVAENSDPVHITRTIIGAIDSSPGSMDNFDVLQTKLKDKLIGKKFLLVLDDVWHGGQRTWENLLKPFQYGNNGSKILLTTRIEKVASTFAATSQHYRLDLLSDEDCWSVFLKHSSISTNLEQYATLEPIGRNIVEKCKGLPLAVKTLGGLLRNKCDVGYWKKILESEIWEFPEDESEIVPALRVSYHYLPSHLKRCFVYCSLFPEDYQFDKDELILLWMAEDLLRPMKNNTLENIGSEYFDELVARSFFQSSSASAGLFVMHDLMHDLATFFAGKFFFREFGNQSIVDSKTRHLSYELIYLRYLNLSETPIVTLPESLCKLYNLQTLKLRDCNKLEMLPSRMQDLVNLRHLDTRRTYCLKEMPKGMSKLKHLNLLGHYAVGEHEENGIRELGPIDVHGSFRISNLENVNNSSEALEAKMGKKKHINKLKLVWSRSDGNTVDVHAERDILKELRPHENLKKLSIYHYRDEIIPDWLGLSCYSNITKLSMYDCKNCRELPSLGQLPSLQHLVIFELHRLERIGEEFYKSVESCHDGTWTPFRSLEYLKFYGMNGWREWHIPDKLDVFPKLKTLTMHNCPVLSGDLAARLPALEQLNIWECEGLSYSLLRAPKLHSLNVKGLGNSALLTGAPHKIRIVDTQQVQSVLEWLLHIQAPCFQRLIIQNCRPTISISGDYLPASLQYLQIQNCSKLTFPEPLEHKLLTEIDVYECNSVKLFPLGALPNLKTLTIRYCPEINCFEEECLPPSLTTLKIRKCQKLERWITSNGGLQSEGLTHLILEEWNEVKSFPTEGSLPASLQSLKLSGFPNLERLDCKGLHHLTSLKELSIVGCPKLENITEERLPASLTKLYISGECPLTSKLQEMNDPRIQIDR 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243965g00001 1098 FunFam Probable disease resistance protein At1g61300 152 322 - -
Stsc243965g00001 1098 PRINTS Disease resistance protein signature 547 563 - -
Stsc243965g00001 1098 PRINTS Disease resistance protein signature 365 379 - -
Stsc243965g00001 1098 PRINTS Disease resistance protein signature 267 281 - -
Stsc243965g00001 1098 PRINTS Disease resistance protein signature 194 209 - -
Stsc243965g00001 1098 Gene3D - 328 412 IPR042197 -
Stsc243965g00001 1098 PANTHER DISEASE RESISTANCE PROTEIN RP 44 827 IPR044974 GO:0006952
Stsc243965g00001 1098 SUPERFAMILY L domain-like 486 858 - -
Stsc243965g00001 1098 SUPERFAMILY L domain-like 876 1087 - -
Stsc243965g00001 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 428 IPR027417 -
Stsc243965g00001 1098 Gene3D - 413 498 IPR036388 -
Stsc243965g00001 1098 Gene3D Ribonuclease Inhibitor 883 1095 IPR032675 -
Stsc243965g00001 1098 FunFam Probable disease resistance protein At1g63360 414 499 - -
Stsc243965g00001 1098 Gene3D - 149 323 IPR027417 -
Stsc243965g00001 1098 Gene3D Ribonuclease Inhibitor 511 877 IPR032675 -
Stsc243965g00001 1098 Pfam Rx N-terminal domain 14 97 IPR041118 -
Stsc243965g00001 1098 Gene3D - 15 133 - -
Stsc243965g00001 1098 Pfam NB-ARC domain 170 394 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243965g00001 Stsc-Chr243965 309 3757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243965g00001 195 532 WRKY Transcription Factor Family AT5G45050 23.699 1.00e-08 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243965g00001 - - ahf:112709990 1148.27