Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc2438g00001 ATGATTCACAAGATAATGGATAATTTTCAAGAATACATACCAATCTTCTTAGTTTGGCTATTAGCTACAATATTGTTCCAAGCCGTACTCACGAAAACTCAATCATCAAAGCTTCGAATTCCACCTGGTCCATTGGCCTTACCAATCATTGGACACTTTCATTTACTAAAACCATCTCTTCACAAAACTGTTCAAAAGATTTCAAACCGTTATGGACCCATTATTCAGCTCTATCTCGGCTCTAACCCCGTCGTGTTCGTTGCCACTCCCGAAATAGCCAAAGAGATCTTGAAAACAAATGACATCTGTTTCGCCAACAGACCTGGAAACACCGTAACAAGTTTCTTGACTTATGGCAAATCCGATTTCGCGTTCGCACCTTACGGAACCTTCTGGAAGTTCATGAAGAAGCTTTGCATGTCAGAGCTTCTTAATGGACGGATGCTTGATCAACTCTCTCCGATCAGGGGAGAGGAGATCAAGAGATTCCTAGAGACGCTTCGAAAGAAAGGCGAAGCAAACGAGGGTGTGAACTTAGCAGATGAGCTCTTAAAGCTAACGAATAGCACGGTGATGAGAATGGCTATAAGCAAAAGCTGCTTTGATAGCCACCACAATGATGAAGCTGATAAGGTGATAAAAAGGGTGAAGGAATCTTCCATGTTGAGTGCGAAATTTAACTTGCAAGATCACTTTTGGTTTTGTAAAGGGTTTGATTTTCAAGGCTTTGGGAAGAGAATGAAGGAGGTTCGTGGAAAGTTTGATACCATGTTAGAGGGTATCATCCAAGAACATGAAGAGGACAGAAGAAGTCAAAAGTCAACGGGAAATAATAACCATGGTGCAAAGGATGTGCTTGATGCTCTTCTAAGAATTTCAGAAGATCAAAGCTCAGAGGTTAAAATAACTAGAGACAATATCAAAGGCTTCTTGATGGATATGTTGTCAGGTGGAACAGATACAACTGCAGTAACAGTAGAATGGGCACTTGCAGAACTAATTAACCACCCAACTGCCATGGAGAAAGCAAGAAAAGAAATTGATTCATTGATAACAAGCAGTGGAAAACACAGAATAGTGATGGAATCTGACATACCAAACCTCCCTTACATCCAAGCCATAATTAAAGAAACACTAAGGCTTCACCCTCCAGCACCGTTCATAATCAGAGCCCCATCTGAGAACTGCACCATTGCAGGGTTTCACATTCCAGCAAGAACCAAAGTCTTCATAAACGTGTGGGCCATTGGAAGAGATCCAAAGAACTGGGATGACCCTCTTGAGTTCAAGCCTGAAAGGTTTCTGATGGGTCAAGGCTCTGAAGTTAGAGGTCAACATTATCAACTCTTGCCCTTTGGAAGTGGAAGAAGAGGGTGTCCTGGAACATCGTTAGCACTCAATGTTGCTCATACAAGCCTTGCTGCTATGATTCAGTGCTTTGAATGGAAGGTTGCTGGAGATGGTGATGGTGGTGGTGTTGATATGGATGAAGGACCGTCATTCATTCTTTCAAGAGCTAAACCACTTATTTGTGTTCCAAAACCAAGGCTTGTCCCTTTTCCATCCCTCTCTTAA 1575 0.4203 MIHKIMDNFQEYIPIFLVWLLATILFQAVLTKTQSSKLRIPPGPLALPIIGHFHLLKPSLHKTVQKISNRYGPIIQLYLGSNPVVFVATPEIAKEILKTNDICFANRPGNTVTSFLTYGKSDFAFAPYGTFWKFMKKLCMSELLNGRMLDQLSPIRGEEIKRFLETLRKKGEANEGVNLADELLKLTNSTVMRMAISKSCFDSHHNDEADKVIKRVKESSMLSAKFNLQDHFWFCKGFDFQGFGKRMKEVRGKFDTMLEGIIQEHEEDRRSQKSTGNNNHGAKDVLDALLRISEDQSSEVKITRDNIKGFLMDMLSGGTDTTAVTVEWALAELINHPTAMEKARKEIDSLITSSGKHRIVMESDIPNLPYIQAIIKETLRLHPPAPFIIRAPSENCTIAGFHIPARTKVFINVWAIGRDPKNWDDPLEFKPERFLMGQGSEVRGQHYQLLPFGSGRRGCPGTSLALNVAHTSLAAMIQCFEWKVAGDGDGGGVDMDEGPSFILSRAKPLICVPKPRLVPFPSLS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc2438g00001 524 CDD CYP93 72 513 - -
Stsc2438g00001 524 Gene3D Cytochrome P450 26 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 SUPERFAMILY Cytochrome P450 41 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS P450 superfamily signature 459 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS P450 superfamily signature 317 334 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS E-class P450 group I signature 326 352 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS E-class P450 group I signature 306 323 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS E-class P450 group I signature 412 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 Pfam Cytochrome P450 41 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc2438g00001 524 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Stsc2438g00001 524 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 16 512 - -
Stsc2438g00001 524 FunFam Cytochrome P450 family protein 32 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc2438g00001 Stsc-Chr2438 4755 7423 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc2438g00001 6 513 Cytochrome P450 AT5G06900 48.031 7.36e-175 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc2438g00001 K24188 - qsa:O6P43_006564 650.973