Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243891g00002 ATGTCTCCCACAACCCCTTCCCTTCTCGACACCCTCCTCTGCCAAGAAGAACACGAAGACACCTTTGAAAACGACGACGAAGCACCGTCGTTTTGTCCCACAAAGCTCCAACCTTTCCCTCACCCCGTTCTACACGACAACGACCTCTTCTGGGAACACGACGAGCTCGCCTCCTTAATCTCCAAAGAGGGAGACACCCACTTCGACCACGACCACCACGATGGGCTTTTAGATGGGCTTCGAGCTGGGCCTGTTGCCTGGATCACTAACGTGTGCGGCCACTACGGGTTTTCAGCTTTAACCACCGTCCTCGCCGTTAACTACTTCGACAGGTTCGTCACGAGCCTCACGTTTCAAATCGACAAGCCATGGATGACTCAGTTAACGGCAGTTGCGTGCTTATCCCTCGCTGCAAAGATGGAAGAGACACATGTGCCCCTCCTTCTAGACCTCCAAGTGGAAGAATCGAGGTTTGTGTTTGAAGCGAAGACAATACAAAGAATGGAGCTTCTTGTGTTGTCTACACTCAAATGGAGGATGCATCCGGTGACCCCAGTTTCTTTCTTTGAACACATTGTAAGAAGGCTTGGCCTCAAGAGTCGCTTGCATTGGGAATTTCTATGGAGGTGCGAAAGGGTTCTTCTCGGCGTCATTGCTGATCCAAGGGTTATGAGTTATCGTCCGTCTACATTGGCTGCTGCTACAATGATCCATGTTATTAAAGAGATCGAGCCGTTTAATGCAACTGAGTACATTAATGAACTTCTGGGACTTCTCAAGATTAGTCAGGAACAAGTGAACCAGTGCTACAAAATCTTACTGAAATCATTAGTTTGCGATGAAGGTGTTATTGGCGGTCTTAACCAGAATCATAAGCGCAGGCGAATATCTGGGCCGAGTAGCCCCGGAGGTGTCATTGATAGTTCTTTCAGTTGCGAATGCTCGAATGATTTGTGGGCCATTGCAACATCGTCGGTTTCGCATTCAGTGCAGCCTCTGTTTAAGAGGAGCAGAGCTAAGGACCAGCAAATGAGACTTCCTTCTGTTAGTCGCGTGTCTATTGATGTTCTTAATAGCCCTCGTTAA 1086 0.4853 MSPTTPSLLDTLLCQEEHEDTFENDDEAPSFCPTKLQPFPHPVLHDNDLFWEHDELASLISKEGDTHFDHDHHDGLLDGLRAGPVAWITNVCGHYGFSALTTVLAVNYFDRFVTSLTFQIDKPWMTQLTAVACLSLAAKMEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWRMHPVTPVSFFEHIVRRLGLKSRLHWEFLWRCERVLLGVIADPRVMSYRPSTLAAATMIHVIKEIEPFNATEYINELLGLLKISQEQVNQCYKILLKSLVCDEGVIGGLNQNHKRRRISGPSSPGGVIDSSFSCECSNDLWAIATSSVSHSVQPLFKRSRAKDQQMRLPSVSRVSIDVLNSPR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243891g00002 361 CDD CYCLIN_AtCycD-like_rpt2 183 273 - -
Stsc243891g00002 361 CDD CYCLIN_AtCycD-like_rpt1 85 178 - -
Stsc243891g00002 361 PANTHER CYCLINS 59 275 IPR039361 -
Stsc243891g00002 361 Pfam Cyclin, N-terminal domain 71 180 IPR006671 -
Stsc243891g00002 361 Pfam Cyclin, C-terminal domain 183 277 IPR004367 -
Stsc243891g00002 361 FunFam D6-type cyclin 67 181 - -
Stsc243891g00002 361 SUPERFAMILY Cyclin-like 50 181 IPR036915 -
Stsc243891g00002 361 Gene3D - 80 181 - -
Stsc243891g00002 361 SMART cyclin_7 86 174 IPR013763 -
Stsc243891g00002 361 FunFam CYCLIN D32 182 271 - -
Stsc243891g00002 361 SUPERFAMILY Cyclin-like 184 280 IPR036915 -
Stsc243891g00002 361 Gene3D - 182 271 - -
Stsc243891g00002 361 SMART Cyclin_C_2 183 314 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243891g00002 Stsc-Chr243891 4818 6983 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243891g00002 8 361 Core Cell Cycle Gene Families AT3G50070 49.030 2.81e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243891g00002 K14505 - gmx:100785030 487.648