Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243889g00001 ATGGATTGTTGTGATGTTTCAAAAAATGGTGTGTTTTCGGGTTTTCCAGCAAAGAGAAGCATAGCTGAGAGGAGGGGTTTCAATTCCAATGCAGCAAGGATCAACACAGCTAGGTTCAGAACAAACGCTTTCCCTTCTCTGTCTCCATCTCCGTCTTCTTATTCTTCTGCAGGTCGATCACCATGCATCACTATACCTCCTGGCATTAGCCCCACTGCATTGCTTGATTCTCCAATCATGCTCCCCAATTCTCAGGCTATGCCTTCTCCAACTACTGGCTCATTTCATTCTTTTTTTCTCAATGATGCTCCTGATTCTTGCCTCAAATTCAAGAACAATGCCACCCTTACCGATCCTAATCCTTTGCCTCCTTACTCTGCCTCTCTGAATCAGGTTTCTAGTAATTGGAACTTGACAAAGGGAGGAAACACAGAATGCCAATCAATTGTTCCGGATCTGCCGCCGATAGACTTTTCGTTTCCGGCAGACTTTTCAAAAGGACAGAACACAAAAAGTATTGAATCTCGTTCATTCAATGATGTGAAAATGGTAAACTGTTCTCTTCTTAACGTTACTAAAGTTGAGATGATGCAAATGTCACGTTCCGATGAAGCCGGTGATGAAAGCACTCAGCCGAAGAATGTTACCCTTGGCGAGGAGGATATCGGACGGCAACCTGTTCTAGAGAAAGACCAGAAGGAGACAATGCTTGCAACCGGAGTGGTAAGGACCTCGGAGGATGGTTATAATTGGAGAAAGTACGGCCAGAAACAAGTAAAAGGCAGTGAGTATCCTAGGAGTTATTATAAATGTACACAGCCTAATTGTCAGGTCAAGAAGAAGGTGGAACGATCCCATGACGGCCAAATAACAGAAATTATTTATAAGGGAACTCATAACCATGCAAAACCACACCTTAGTCGTCGAGCATCAGGGCTTTCTCCTGATGAGATTTCGGACATGGGTGAAGCTGGTGAAAACTATGTTAAAGTTGAAGGTCCGGGTTGGAAAAATGTTCAGCCGGGAGCAAAAGACATAAAACACGGTTTGGATTGGAAGGCTGATGGTCTGGAAAGGACATCCTCGACTTCTGTCGTGATTGAACTTTCGGATCCTATTTCAAGTAACAAAGGTAAACCGTTGTGTGTGTTTGAAGCAGATGACACTCCAGAGCATTCTTCCACACTTGCCAGTCATGATGGTGATGAAGATGGAACCACTCAAGCACTAGCATCAGTTGAGGATGATGCTGAAGATGATGAATCAGATTCCAAAAGAAGGAAAAAAGAGAACTACTTGGTTGAATCAACTTTGCCTTCTAGGGCTGTCCGTGAGCCAAGAGTGGTGGTCCAAATTGAGACTGAGGTTGACATACTCGATGATGGTTATCGATGGCGCAAGTATGGACAAAAGGTTGTTAAGGGAAACCCAAACCCAAGGAGCTACTATAAATGCACAACTGCCGGATGCCCCGTGAGGAAACACGTCGAAAGGGCTTCGCACAATACGAAATATGTAATCACTACATATGAGGGCAAACATAATCATGAAGTTCCGACCGCCAGAAACAACAATCATATAAGCACGAATGATGGTGGTTTACCTCCCAGTGGTTCTAATGGGCACTCAGCTCTTCCGTTACCTGGAAGTGCTGTTATCCCAAAGTCTGAAAATCATCAAACTCTTACATCTCATTTTGATCGAAAACCTGAATTTGGCAGTGACTTTCTTCGGCCTAGTTTGGTCGGGGCATTTGGCAACAATTTGAAGTTTGGCTCTTCCCCCATGTGCCAGATGAAGTATCCTTCATTGAGTAGCACCATGCCTTACAGCTCGTTTGGACTGAATACCGATCGCTGCACTGCCCCGCAACCTGGATCTATTCCCTCGGTTTACCCTGAATTTCCAATGCCGCTTCCCTTGAATCTTCCCTCAGCTGGAAACTTCTCTCTTGCCGGATTAAACTTCAACTGTGGAAAGCCAATGAATCCAGTGCAGCCTTACCTTTCAGGGCAACAAGTGAAGGATATCGATACCGGTTTCTTGAGACCTAAACAAGAGCAAAAGGATGATACAATATATGGAACATGCTTACCTCCAATTGATCATGGAAATTCTTCATCATCAGCTCAATCATCCATTTACCAGCAAGTCATGCAAAATTTCCCTTCATAA 2175 0.4414 MDCCDVSKNGVFSGFPAKRSIAERRGFNSNAARINTARFRTNAFPSLSPSPSSYSSAGRSPCITIPPGISPTALLDSPIMLPNSQAMPSPTTGSFHSFFLNDAPDSCLKFKNNATLTDPNPLPPYSASLNQVSSNWNLTKGGNTECQSIVPDLPPIDFSFPADFSKGQNTKSIESRSFNDVKMVNCSLLNVTKVEMMQMSRSDEAGDESTQPKNVTLGEEDIGRQPVLEKDQKETMLATGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGTHNHAKPHLSRRASGLSPDEISDMGEAGENYVKVEGPGWKNVQPGAKDIKHGLDWKADGLERTSSTSVVIELSDPISSNKGKPLCVFEADDTPEHSSTLASHDGDEDGTTQALASVEDDAEDDESDSKRRKKENYLVESTLPSRAVREPRVVVQIETEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHNTKYVITTYEGKHNHEVPTARNNNHISTNDGGLPPSGSNGHSALPLPGSAVIPKSENHQTLTSHFDRKPEFGSDFLRPSLVGAFGNNLKFGSSPMCQMKYPSLSSTMPYSSFGLNTDRCTAPQPGSIPSVYPEFPMPLPLNLPSAGNFSLAGLNFNCGKPMNPVQPYLSGQQVKDIDTGFLRPKQEQKDDTIYGTCLPPIDHGNSSSSAQSSIYQQVMQNFPS 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243889g00001 724 Gene3D WRKY domain 232 305 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 Pfam WRKY DNA -binding domain 246 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 Pfam WRKY DNA -binding domain 460 517 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 SMART WRKY_cls 245 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 SMART WRKY_cls 459 518 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 FunFam WRKY transcription factor 57 445 519 - -
Stsc243889g00001 724 MobiDBLite consensus disorder prediction 412 431 - -
Stsc243889g00001 724 ProSiteProfiles WRKY domain profile. 240 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 MobiDBLite consensus disorder prediction 378 407 - -
Stsc243889g00001 724 FunFam WRKY transcription factor 232 305 - -
Stsc243889g00001 724 Gene3D WRKY domain 446 512 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 MobiDBLite consensus disorder prediction 516 548 - -
Stsc243889g00001 724 SUPERFAMILY WRKY DNA-binding domain 243 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 172 549 IPR044810 GO:0003700
Stsc243889g00001 724 ProSiteProfiles WRKY domain profile. 454 519 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc243889g00001 724 MobiDBLite consensus disorder prediction 521 537 - -
Stsc243889g00001 724 SUPERFAMILY WRKY DNA-binding domain 452 519 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243889g00001 Stsc-Chr243889 1109 4397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243889g00001 5 522 WRKY Transcription Factor Family AT5G56270 41.788 2.14e-98 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc243889g00001 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243889g00001 K18835 - gmx:100800211 959.133