Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243885g00001 TTGCCAGGAAAGGCATATGCTAGGAGGCAACATGTATGGCTCACAGGTGCAAACGAGGTGGACAGCAAAACTTTTACCAGAGCTATTCTAGCCAAGACCGTGGTGTGTATTCCTCTATTGGACGGTGTCGTTGAGTTTGGCACTATAGATAAGGTCCAAGAAGACATTAAATTTATCCAACATGTCAAAAGCTTTTTTATAGAGCACCATGGCTCCTGTCCTCCACCGCCAAAGCCCGCCCTCTCCGAGCATTCCACCTCCAATCCCGCATCTTCATCTGATCGCCTCATTTATACTACTGTAGCTGATCCTCCACCTAATCTTACTAATCAAGATAATATGGAAGAAGATGAAGACGACGAAGAGGAAGATGACGACGATGATGACGAAGAAGAAGAAGGAGAACCTGTATTGGACTCTGAATATGAAACGAGACGTAATAACACTCATCTAACCTCAACAACAGATGCTTCGGCTGGAATTGTAGAGCCAAGTGAGTTGATGGAATTAGAAATGTCTGAAGATATTAGAGTCGGATCATCTCCCAACGACGGATCAAATAATCTTGATTCAAATTTTCATTTACTAGCCGTTACTGAAACGGATAATCCATCGGGTCAAGTTGACTCTTATCGAATTGACCCGACTCAAAGATGGCCTCCAATGCAAAACCCTTTGGGTGAGCTCCAAGTTCAACTACCAGGTTCAGTGTTTCCACCACTAGAAGATCAAATATTGACACAAGAAGATGATCACTATTCTCAAACTGTATCAAGCATCCTCCAAAACCAATCAACACGTTGGGCTGACTCCCCTTCAATAGCATGCTACGTCACTTGCTCCAACCAATCAGCATTCGCCAAGTGGACAGCCGTCGACACGGAAGACCATCTCCACATGGCCACGGCCGACGGCTCATCACAATGGCTCCTAAAATACATCCTATTTACTGTGCCCTACCTACACTCCACCAAAAACAATGAAGAAAACAATAGCTCTCCAAATAACACAAATCCTACCAGCTCAGCCGGCACAGACCGGCTGCGCGGAGGGGGTAATAAAGGTAGCGGCACTCCACAGGACGAGCTGAGTGCCAACCATGTCCTGGCGGAGCGCCGCCGCCGAGAGAAGCTAAACGAGAGATTCATCATCCTAAGATCACTTGTCCCATTTGTTACCAAAATGGACAAAGCTTCAATTTTGGGGGACACCATTGAATATGTGAAACAGCTTCGAAGGAAGATCCAAGACTTAGAAACACGTAACCGCCAAATAGAAGTTGAACAACAACGTTCGAGGACACCGTCAACAACAATGGAAGTTCACCATAGTGGCTCCTCCAACAAGGAACAACAACAACATACGGCGGTTGTGGTAGGGCATGAAAAGAGGAAGGTGAGGATTGTGGAGGGGACAAAGACGGCGACCAAGGCGGTGGCGGCGGCAGCGACGACCGCAGAGGCATCGGTGCAAGTTTCAATTATAGAGAGTGATGCATTGTTGGAGTTGGAGTGTAATCACAGGGAAGGGTTACTACTTGATGTGATGTTGGTGTTAAGAGAGATGAAGATTGAGGTTATTGGCGTTCAATCTTCACTCAACAATGGAGTTTTTGTGGCTGAGTTGAGGGCTAAAGTTAAGGAGAATAATAATAGTAATAGTGGCACAAATGGAAAAAAGGTTAGCATTGTGGAAGTGAAGAGGGCATTAAATCAG 1716 0.4575 LPGKAYARRQHVWLTGANEVDSKTFTRAILAKTVVCIPLLDGVVEFGTIDKVQEDIKFIQHVKSFFIEHHGSCPPPPKPALSEHSTSNPASSSDRLIYTTVADPPPNLTNQDNMEEDEDDEEEDDDDDDEEEEGEPVLDSEYETRRNNTHLTSTTDASAGIVEPSELMELEMSEDIRVGSSPNDGSNNLDSNFHLLAVTETDNPSGQVDSYRIDPTQRWPPMQNPLGELQVQLPGSVFPPLEDQILTQEDDHYSQTVSSILQNQSTRWADSPSIACYVTCSNQSAFAKWTAVDTEDHLHMATADGSSQWLLKYILFTVPYLHSTKNNEENNSSPNNTNPTSSAGTDRLRGGGNKGSGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRRKIQDLETRNRQIEVEQQRSRTPSTTMEVHHSGSSNKEQQQHTAVVVGHEKRKVRIVEGTKTATKAVAAAATTAEASVQVSIIESDALLELECNHREGLLLDVMLVLREMKIEVIGVQSSLNNGVFVAELRAKVKENNNSNSGTNGKKVSIVEVKRALNQ 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243885g00001 572 SMART finulus 368 417 IPR011598 GO:0046983
Stsc243885g00001 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 411 IPR011598 GO:0046983
Stsc243885g00001 572 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 1 66 IPR025610 -
Stsc243885g00001 572 MobiDBLite consensus disorder prediction 325 367 - -
Stsc243885g00001 572 MobiDBLite consensus disorder prediction 429 454 - -
Stsc243885g00001 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 435 IPR036638 GO:0046983
Stsc243885g00001 572 MobiDBLite consensus disorder prediction 325 347 - -
Stsc243885g00001 572 Coils Coil 401 428 - -
Stsc243885g00001 572 MobiDBLite consensus disorder prediction 425 454 - -
Stsc243885g00001 572 PANTHER TRANSCRIPTION FACTOR TT8 1 572 - -
Stsc243885g00001 572 Pfam Helix-loop-helix DNA-binding domain 365 412 IPR011598 GO:0046983
Stsc243885g00001 572 MobiDBLite consensus disorder prediction 70 162 - -
Stsc243885g00001 572 Gene3D - 363 434 IPR036638 GO:0046983
Stsc243885g00001 572 MobiDBLite consensus disorder prediction 112 138 - -
Stsc243885g00001 572 MobiDBLite consensus disorder prediction 83 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243885g00001 Stsc-Chr243885 3160 8294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243885g00001 1 86 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 69.231 2.82e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc243885g00001 bHLH-MYC_N 3.6e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243885g00001 - - adu:107475781 824.313