Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243823g00002 ATGGAAAAACAATGTGAGGGAGTTGCAGTGGGAATAGATCTTGGCACAACATATTCTTGTGTTGCAGTGTGGCTGGAACACCACAGCAGAGTTGAGATCATTCACAACGATCAAGGCAACAAAACAACACCGTCTTATGTTGCTTTCACTGACAAACAAAGGTTGATTGGTGACGCTGCTAAGAACCAGGCTGCAATCAACCCTGCAAACACTATCTTTGATGCTAAGAGGATAATTGGCAGAAAATATAGTGATCCCTATATTCAGAAAGACAAACTTCTGTGGCCATTCAATGTCGTTTCCGGTGTTGACGACCAACCAACAATTGTTGTTCAGCACAAGGGTCAAGAGAAGCGACTTTGTGCCGAGGAAGTATCAGCTATGATTCTCATGAAGATGCGCAAGATTGCAGAGGCATATCTAGAGTCACCTGTGAAGAATGCAGTTATTACTGTACCTGCATACTTCAATGACTCTCAGCGCAAGGCCACCAGAGATGCCGGTGCCATTGCTGGCCTTAATGTTATGAGGATAATCAATGAGCCCACTGCTGCAGCTATTGCTTATGGCCTTGACAAAAAATCAAACTGTGTTGGAGAAAGGAACATTTTTGTCTTTGACTTTGGCGGCGGCACATTCGATGTATCACTGCTTACCATCAAAGATAAGGTGTTCAAGATGAAGGCTACAGCTGGAAATACTCACCTCGGAGGGGAAGACTTTGACAACAGAATGTTAAATTACTTTATGCAGGAGTTCAACAAGAAGAACAATGTGGACATAAGTGGGAATTCAAGAGCCTTGAGGAGGTTGAGAAATGCATGCGAAAGGGCAAAGAGAGTACTCTCTTACAATGTTGATGCCAACATTGAAATAGATAGCTTATTTCAAGGCATTGACTTCTGTTCATCAATCACTCGTGGTAGGTTTGAGGAACTCAACATGGACCTCTTTAGAGAGTGCATATGTACTGTAAACAAGTGTCTTATTGATGCAAACATGGACAAGAACAGTGTGGACGATGTTGTCCTTGTTGGAGGCTCTTCTAGGATTCCCAAAATGCAGCAGTTATTGCAGGAATTCTTCAATGGAAAGGATCTCTGCAGGAGTATCAACCCTGATGAAGCTGTTGCATTTGGAGCAGCAGTACAAGCTGCTTTATTGAGTGAAGGCTTTAAGAATGTGCCAAAATTGGTGCTGCATGATATTACTCCGCTATCACTTGGTATATTAATTAAAGGAGATCTAATGAGTGTTGTGATTCCTAAGAATACTACTATTCCTGTGAAGAAGAAACAAGGATATTCTACATCAGAAGATAATCAAACTGTAATAAAGTTTGAAGTTTTTGAGGGTGAGAGGGCAAGAGCCACTGATAACAACTTGTTGGGTTGGTTTAGTCTTTCAGGCATACCTAAAGGTCCTAAAGGTCATCCTGTTATGATAACCTTCGAAATTGATGCAATGGAAGTTGCAAGATTGATTCAAGAAGCTAAAGATTATGAGGCTGAAGACAAAAAGTTTCTTGAGAAGGCTAGAGCCAAAAAAGATTTGGACGATTATGTTTACAAAATGGAAAAATCTTTAAAAGATATTAAAAAGAGCAAAGGAATAATCACTGATGCAATTATTAAGGCCAAGAGTTTGCTTGATGGTGATGTAGATCAGCATGAAAAAGATGTATTCGAGAAGAATCTGAAGGAGCTTCAGAAGATTTTTGATCCCACGATGCCAAGATTCAAATATTAA 1749 0.4031 MEKQCEGVAVGIDLGTTYSCVAVWLEHHSRVEIIHNDQGNKTTPSYVAFTDKQRLIGDAAKNQAAINPANTIFDAKRIIGRKYSDPYIQKDKLLWPFNVVSGVDDQPTIVVQHKGQEKRLCAEEVSAMILMKMRKIAEAYLESPVKNAVITVPAYFNDSQRKATRDAGAIAGLNVMRIINEPTAAAIAYGLDKKSNCVGERNIFVFDFGGGTFDVSLLTIKDKVFKMKATAGNTHLGGEDFDNRMLNYFMQEFNKKNNVDISGNSRALRRLRNACERAKRVLSYNVDANIEIDSLFQGIDFCSSITRGRFEELNMDLFRECICTVNKCLIDANMDKNSVDDVVLVGGSSRIPKMQQLLQEFFNGKDLCRSINPDEAVAFGAAVQAALLSEGFKNVPKLVLHDITPLSLGILIKGDLMSVVIPKNTTIPVKKKQGYSTSEDNQTVIKFEVFEGERARATDNNLLGWFSLSGIPKGPKGHPVMITFEIDAMEVARLIQEAKDYEAEDKKFLEKARAKKDLDDYVYKMEKSLKDIKKSKGIITDAIIKAKSLLDGDVDQHEKDVFEKNLKELQKIFDPTMPRFKY 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243823g00002 582 Gene3D - 10 386 - -
Stsc243823g00002 582 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc243823g00002 582 Coils Coil 491 511 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 397 416 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 477 493 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 371 391 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc243823g00002 582 PRINTS 70kDa heat shock protein signature 339 355 - -
Stsc243823g00002 582 FunFam Heat shock protein 70 10 201 - -
Stsc243823g00002 582 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc243823g00002 582 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc243823g00002 582 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 518 IPR029047 -
Stsc243823g00002 582 Gene3D - 73 128 - -
Stsc243823g00002 582 FunFam Heat shock 70 kDa 237 320 - -
Stsc243823g00002 582 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 389 489 IPR029047 -
Stsc243823g00002 582 Gene3D Actin; Chain A, domain 4 237 320 - -
Stsc243823g00002 582 Pfam Hsp70 protein 9 488 IPR013126 GO:0005524|GO:0140662
Stsc243823g00002 582 Pfam Hsp70 protein 490 577 IPR013126 GO:0005524|GO:0140662
Stsc243823g00002 582 Gene3D - 490 578 IPR029048 -
Stsc243823g00002 582 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Stsc243823g00002 582 Gene3D - 194 368 - -
Stsc243823g00002 582 SUPERFAMILY Actin-like ATPase domain 200 389 IPR043129 -
Stsc243823g00002 582 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 489 579 IPR029048 -
Stsc243823g00002 582 PANTHER HEAT SHOCK PROTEIN 70KDA 9 542 IPR013126 GO:0005524|GO:0140662
Stsc243823g00002 582 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243823g00002 Stsc-Chr243823 3823 5915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243823g00002 1 580 Calmodulin-binding Proteins AT3G12580 61.228 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243823g00002 K03283 - gmx:102667572 814.298