Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243823g00001 ATGGCAAAAGAATCTGAGGGAGTTGCGGTGGGAATAGATCTTGGCACAACGTATTCTTGTGTTGCAGTGTGGCTTGAACACCACAACAGAGTTGAGATCATTCACAACAATCAAGGCAACAAAACGACACCTTCTTATGTTGCTTTCACTGACAAACAAAGGTTGATCGGTGATGCTGCTAAGAACCAGGCTGCAATCAACCCTACCAACACTGTCTTTGATGCTAAGAGGATGATTGGCAGAAAATACAATGACCCCAATATTCAGAAAGACAAACTTTTGTGGCCATTCAAAGTCATTTCCGGTGTTGATGATCAACCAACAATTGTTGTTCAGCACAAGGGTCAAGAGAGGCGACTTTGTGCCGAGGAAGTATCAGCTATGATTCTCCTGAAGATGCGCAACATTGCAGAGGCATATCTAGAGTCACCTGTGAAGAATGCAGTTATCACTACACGCCGCGCCATTGCTGGCCTTAATGTTTTGAGGATCATCAACGAGCCAACTGCTGCAGCTATTGCTTATGGCCTTGACAAAAGATCAAACTGTGTTGGAGAAAGGAACATTTTTGTCTCTGACTTTGGCGGTGGCACATTTGATGTATCACTGCTTACCATCAAAGATAAGGTCTTTGAAATTAAGGCTACAGCAGGAAATACTCACCTCGGTGGAGAAGACTTTGACAACAGAATGTTAAATTACTTTATGGAGGAGTTCAACAAGAAGAACAATTTGGACATAAGTGGGAATTCAAGAGCCTTGAGGAGGTTGAGAAATGCATGCGAAAGGGCAAAGAGAGTACTCTCTTACAATGTCGATGCCTTCATTGAAATTGATGGTTTATTTAAAGGCATTGATTTCTGTTCATCAATCACTCGTGGTAGGTTTGAGGAACTCAACATAGACCTCTTCAGAGAGTGCATAGATACTGTAAACAAGTGTGTTACTGATGCTAACATGGACAAAAACTGTGTGGACGATGTTGTCCTTGTTGGAGGCTCTTCTAGGATTCCCAAATTGCAGCAGCTATTGCAGGAATTCTTCAACGGAAAGGATCTCTGCAGGAGTATCAACCCTGATGAATCTGTTGCGTTTGGAGCAGCAGTACAAGCTGCTTTGTTGAGTGAAGGCTTTAAGAATGTGCCAAATTTAGTGCTGCATGATGTTACTCCGCTGTCACTTGGTATATTAACTAAAGGAGATCTAATGAGTGTAGTGATTCCTAAGAATACTACTATTCCTGTGAAGAAGAAACAGAGATATTCTACACCAGGAGATAATCATACTGTAATAAAGATTGACGTTTTTGAGGGTGAGAGGGCAAGAGCCACTGATAACAACTTGTTGGGTTGGTTTAAGCTTTCAGGCATACCTAAAGGTCCTAAAGGTCAACCTGTTATGGTAACCTTCGAGATTGATGCCAATGGTATCTTATATGTAACTGCCGAAGATGAAACAACTGGCAACAGCAATGAGATTACAATAAGCCATGATACTGGACGAATGTCACCGAAGGAAGTTGCAAGATTGATTCAAGAAGCTAAAGATTATGAGGCTGAAGACAAAAAGTTTCTTGAGAAGGCTAGAGCAAGAAAAGATTTGGATGATTATATTTACAACATGGAAAAAGATTTAAAAGATAAGAAAAAGAACAAAGGAATAATCGCTCGTAGTATTCTTAAGGCCAAGAGGTTGGTTACTGACGATGAAGATAAGCATGATAAAGAGGAGTATGAGAAGGAGCTGAAGCATCTTCAGAAAGTTTTTGAGCGCATGATGCCAAGATTGGAAAATTAA 1797 0.4079 MAKESEGVAVGIDLGTTYSCVAVWLEHHNRVEIIHNNQGNKTTPSYVAFTDKQRLIGDAAKNQAAINPTNTVFDAKRMIGRKYNDPNIQKDKLLWPFKVISGVDDQPTIVVQHKGQERRLCAEEVSAMILLKMRNIAEAYLESPVKNAVITTRRAIAGLNVLRIINEPTAAAIAYGLDKRSNCVGERNIFVSDFGGGTFDVSLLTIKDKVFEIKATAGNTHLGGEDFDNRMLNYFMEEFNKKNNLDISGNSRALRRLRNACERAKRVLSYNVDAFIEIDGLFKGIDFCSSITRGRFEELNIDLFRECIDTVNKCVTDANMDKNCVDDVVLVGGSSRIPKLQQLLQEFFNGKDLCRSINPDESVAFGAAVQAALLSEGFKNVPNLVLHDVTPLSLGILTKGDLMSVVIPKNTTIPVKKKQRYSTPGDNHTVIKIDVFEGERARATDNNLLGWFKLSGIPKGPKGQPVMVTFEIDANGILYVTAEDETTGNSNEITISHDTGRMSPKEVARLIQEAKDYEAEDKKFLEKARARKDLDDYIYNMEKDLKDKKKNKGIIARSILKAKRLVTDDEDKHDKEEYEKELKHLQKVFERMMPRLEN 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243823g00001 598 SUPERFAMILY Actin-like ATPase domain 186 375 IPR043129 -
Stsc243823g00001 598 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 375 554 IPR029047 -
Stsc243823g00001 598 Coils Coil 507 527 - -
Stsc243823g00001 598 SUPERFAMILY Actin-like ATPase domain 8 179 IPR043129 -
Stsc243823g00001 598 PRINTS 70kDa heat shock protein signature 357 377 - -
Stsc243823g00001 598 PRINTS 70kDa heat shock protein signature 463 479 - -
Stsc243823g00001 598 PRINTS 70kDa heat shock protein signature 325 341 - -
Stsc243823g00001 598 PRINTS 70kDa heat shock protein signature 197 207 - -
Stsc243823g00001 598 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc243823g00001 598 PRINTS 70kDa heat shock protein signature 383 402 - -
Stsc243823g00001 598 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc243823g00001 598 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc243823g00001 598 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc243823g00001 598 Gene3D - 73 128 - -
Stsc243823g00001 598 Pfam Hsp70 protein 9 594 IPR013126 GO:0005524|GO:0140662
Stsc243823g00001 598 Gene3D - 180 354 - -
Stsc243823g00001 598 PANTHER HEAT SHOCK PROTEIN 70KDA 9 561 IPR013126 GO:0005524|GO:0140662
Stsc243823g00001 598 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc243823g00001 598 ProSitePatterns Heat shock hsp70 proteins family signature 3. 328 342 IPR018181 -
Stsc243823g00001 598 Gene3D - 10 372 - -
Stsc243823g00001 598 FunFam Heat shock 70 kDa 223 306 - -
Stsc243823g00001 598 Gene3D Actin; Chain A, domain 4 223 306 - -
Stsc243823g00001 598 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 380 534 IPR029047 -
Stsc243823g00001 598 FunFam Heat shock 70 kDa protein 377 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243823g00001 Stsc-Chr243823 769 2704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243823g00001 1 596 Calmodulin-binding Proteins AT3G12580 60.097 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243823g00001 K03283 - gmx:102667572 803.897