Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243786g00005 ATGAAGAGTTGCACATATTCAAATAACTACAGCCATAATTTTGCACTTTTCTTGTGTTGCAGAAGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGACCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGACGTGTATGAGTTCTTCTCGAGGGCGGGCAAGGTGCGAGATGTTCGGTTGATTATGGACCGCAATACAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTAACTGGTCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGCTATAGGCCCATATTCTGGGGGAGCAAGAAGGCTATATGTCGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGCACAGTGTTTGAAGCATTTGGTCAGGTTGAACTTGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTCGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTAGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAGGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGGCTGGTTCAGCTGGTAGTGCTACTCTCAACGGCACTGGCCTTAACATGCCCGCAACAGTGGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGTCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCGTACTGTTAAAGAATATGTTTGATCCCAATGATGAGAAGGAGCCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAAAGCTCTAAATTTGGGAAGTTAAAGCACATCTTTGTTGATAAGGATAGCTCTGGTTTTGTATACTTACGGTTCGAAAATACTCAATCCGCAACAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA 1257 0.4455 MKSCTYSNNYSHNFALFLCCRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGVGYIEFYDVMSVPMAIALTGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGAIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLNRSGTAPSMAGSAGSATLNGTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECVLLKNMFDPNDEKEPDFDLDIKEDVEAESSKFGKLKHIFVDKDSSGFVYLRFENTQSATSAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243786g00005 418 CDD RRM3_RBM39_like 323 405 - -
Stsc243786g00005 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 119 IPR000504 GO:0003723
Stsc243786g00005 418 Gene3D - 319 418 IPR012677 -
Stsc243786g00005 418 Gene3D - 140 249 IPR012677 -
Stsc243786g00005 418 SMART rrm1_1 43 115 IPR000504 GO:0003723
Stsc243786g00005 418 SMART rrm1_1 325 403 IPR000504 GO:0003723
Stsc243786g00005 418 SMART rrm1_1 147 219 IPR000504 GO:0003723
Stsc243786g00005 418 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 237 342 IPR029123 -
Stsc243786g00005 418 FunFam CC1-like, splicing factor 141 249 - -
Stsc243786g00005 418 SUPERFAMILY RNA-binding domain, RBD 37 123 IPR035979 GO:0003676
Stsc243786g00005 418 Gene3D - 20 129 IPR012677 -
Stsc243786g00005 418 CDD RRM1_RBM39_like 43 115 - -
Stsc243786g00005 418 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 13 417 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc243786g00005 418 FunFam RNA-binding protein 39 isoform X1 35 127 - -
Stsc243786g00005 418 SMART rrm2_1 325 403 IPR003954 GO:0003676
Stsc243786g00005 418 SMART rrm2_1 147 219 IPR003954 GO:0003676
Stsc243786g00005 418 FunFam Splicing factor, CC1-like protein 319 418 - -
Stsc243786g00005 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 217 IPR000504 GO:0003723
Stsc243786g00005 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 400 IPR000504 GO:0003723
Stsc243786g00005 418 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 111 IPR000504 GO:0003723
Stsc243786g00005 418 NCBIfam splicing factor, CC1-like family 21 416 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc243786g00005 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 223 IPR000504 GO:0003723
Stsc243786g00005 418 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 324 407 IPR000504 GO:0003723
Stsc243786g00005 418 SUPERFAMILY RNA-binding domain, RBD 146 410 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243786g00005 Stsc-Chr243786 1229 5475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243786g00005 43 209 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 2.63e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243786g00005 K13091 - gmx:100789839 660.218