Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243786g00004 ATGAAATTAATTTCATTCTTTATGCTTGTGTGGTTTCTCTTACCAAGTATATATAAGCTTTTAACAGGTTTCAACTTAATGCAATTAGGTCCCTCAAACCTTCGTACTGCCATCAATCCAAATTGGCGATGCTGTTTCAATATAAGATTTTGTTTTATTTGTAGAAGAAGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGACCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGACGTGTATGAGTTCTTCTCGAGGGCGGGCAAGGTGCGAGATGTTCGGTTGATTATGGACCGCAATACAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTAACTGGTCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGCTATAGGCCCATATTCTGGGGGAGCAAGAAGGCTATATGTCGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGCACAGTGTTTGAAGCATTTGGTCAGGTTGAACTTGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTCGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTAGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAGGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGGCTGGTTCAGCTGGTAGTGCTACTCTCAACGGCACTGGCCTTAACATGCCCGCAACAGTGGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGTCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCGTACTGTTAAAGAATATGTTTGATCCCAATGATGAGAAGGAGCCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAAAGCTCTAAATTTGGGAAGTTAAAGCACATCTTTGTTGATAAGGATAGCTCTGGTTTTGTATACTTACGGTTCGAAAATACTCAATCCGCAACAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA 1362 0.4347 MKLISFFMLVWFLLPSIYKLLTGFNLMQLGPSNLRTAINPNWRCCFNIRFCFICRRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGVGYIEFYDVMSVPMAIALTGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGAIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLNRSGTAPSMAGSAGSATLNGTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECVLLKNMFDPNDEKEPDFDLDIKEDVEAESSKFGKLKHIFVDKDSSGFVYLRFENTQSATSAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243786g00004 453 FunFam CC1-like, splicing factor 176 284 - -
Stsc243786g00004 453 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 272 377 IPR029123 -
Stsc243786g00004 453 NCBIfam splicing factor, CC1-like family 55 451 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc243786g00004 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Stsc243786g00004 453 Gene3D - 354 453 IPR012677 -
Stsc243786g00004 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 359 442 IPR000504 GO:0003723
Stsc243786g00004 453 Gene3D - 54 164 IPR012677 -
Stsc243786g00004 453 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 57 452 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc243786g00004 453 FunFam Splicing factor, CC1-like protein 354 453 - -
Stsc243786g00004 453 FunFam RNA-binding protein 39 isoform X1 70 162 - -
Stsc243786g00004 453 CDD RRM1_RBM39_like 78 150 - -
Stsc243786g00004 453 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Stsc243786g00004 453 SMART rrm2_1 360 438 IPR003954 GO:0003676
Stsc243786g00004 453 SMART rrm2_1 182 254 IPR003954 GO:0003676
Stsc243786g00004 453 SMART rrm1_1 78 150 IPR000504 GO:0003723
Stsc243786g00004 453 SMART rrm1_1 360 438 IPR000504 GO:0003723
Stsc243786g00004 453 SMART rrm1_1 182 254 IPR000504 GO:0003723
Stsc243786g00004 453 SUPERFAMILY RNA-binding domain, RBD 181 445 IPR035979 GO:0003676
Stsc243786g00004 453 CDD RRM3_RBM39_like 358 440 - -
Stsc243786g00004 453 SUPERFAMILY RNA-binding domain, RBD 72 158 IPR035979 GO:0003676
Stsc243786g00004 453 Gene3D - 174 283 IPR012677 -
Stsc243786g00004 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 252 IPR000504 GO:0003723
Stsc243786g00004 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 146 IPR000504 GO:0003723
Stsc243786g00004 453 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 383 435 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243786g00004 Stsc-Chr243786 1229 5905 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243786g00004 78 244 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 2.86e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243786g00004 K13091 - gmx:100789839 655.595