Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc243786g00003 ATGTTCTACATGTTGGTCACAGTTTTTTGTAATGGGTGTCCCTCAAACCTTCGTACTGCCATCAATCCAAATTGGCGATGCTGTTTCAATATAAGATTTTGTTTTATTTGTAGAAGAAGACATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGGTTGATCCTGAAAGAGACCAAAGAACTGTGTTTGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGACGTGTATGAGTTCTTCTCGAGGGCGGGCAAGGTGCGAGATGTTCGGTTGATTATGGACCGCAATACAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTAACTGGTCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGCTATAGGCCCATATTCTGGGGGAGCAAGAAGGCTATATGTCGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGCACAGTGTTTGAAGCATTTGGTCAGGTTGAACTTGTCCAGCTGCCTCTTGATGAAAGTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTCGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTAGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTTGATGATGATGAGGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGGCTGGTTCAGCTGGTAGTGCTACTCTCAACGGCACTGGCCTTAACATGCCCGCAACAGTGGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGTCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCGTACTGTTAAAGAATATGTTTGATCCCAATGATGAGAAGGAGCCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAAAGCTCTAAATTTGGGAAGTTAAAGCACATCTTTGTTGATAAGGATAGCTCTGGTTTTGTATACTTACGGTTCGAAAATACTCAATCCGCAACAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATATGAGGATAAATTCCCAGATAGCAGATGA 1311 0.4432 MFYMLVTVFCNGCPSNLRTAINPNWRCCFNIRFCFICRRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGVGYIEFYDVMSVPMAIALTGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGAIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGHCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNTGDFDDDEGGGLSLNASSRALLMQKLNRSGTAPSMAGSAGSATLNGTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECVLLKNMFDPNDEKEPDFDLDIKEDVEAESSKFGKLKHIFVDKDSSGFVYLRFENTQSATSAQRALHGRWFAGKMITASFMVPQTYEDKFPDSR 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc243786g00003 436 Gene3D - 159 266 IPR012677 -
Stsc243786g00003 436 FunFam RNA-binding protein 39 isoform X1 53 145 - -
Stsc243786g00003 436 SUPERFAMILY RNA-binding domain, RBD 164 428 IPR035979 GO:0003676
Stsc243786g00003 436 FunFam Splicing factor, CC1-like protein 337 436 - -
Stsc243786g00003 436 SUPERFAMILY RNA-binding domain, RBD 55 141 IPR035979 GO:0003676
Stsc243786g00003 436 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 40 435 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc243786g00003 436 CDD RRM1_RBM39_like 61 133 - -
Stsc243786g00003 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 425 IPR000504 GO:0003723
Stsc243786g00003 436 SMART rrm1_1 343 421 IPR000504 GO:0003723
Stsc243786g00003 436 SMART rrm1_1 165 237 IPR000504 GO:0003723
Stsc243786g00003 436 SMART rrm1_1 61 133 IPR000504 GO:0003723
Stsc243786g00003 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 235 IPR000504 GO:0003723
Stsc243786g00003 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 366 418 IPR000504 GO:0003723
Stsc243786g00003 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 129 IPR000504 GO:0003723
Stsc243786g00003 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 241 IPR000504 GO:0003723
Stsc243786g00003 436 FunFam CC1-like, splicing factor 159 267 - -
Stsc243786g00003 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 137 IPR000504 GO:0003723
Stsc243786g00003 436 CDD RRM3_RBM39_like 341 423 - -
Stsc243786g00003 436 NCBIfam splicing factor, CC1-like family 38 434 IPR006509 GO:0003723|GO:0005634|GO:0006397
Stsc243786g00003 436 Gene3D - 37 147 IPR012677 -
Stsc243786g00003 436 SMART rrm2_1 165 237 IPR003954 GO:0003676
Stsc243786g00003 436 SMART rrm2_1 343 421 IPR003954 GO:0003676
Stsc243786g00003 436 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 255 360 IPR029123 -
Stsc243786g00003 436 Gene3D - 337 436 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc243786g00003 Stsc-Chr243786 1229 8272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc243786g00003 61 227 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 3.69e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc243786g00003 K13091 - gmx:100789839 655.595